GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000789-TA|BGIBMGA000789-PA|undefined
         (95 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    25   6.1  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    25   6.1  
AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical ...    25   6.1  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    25   8.1  
L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    25   8.1  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     25   8.1  

>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical protein
            K09C8.5 protein.
          Length = 1328

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 20   LPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPV-RRRRPSHARCHDCHD 68
            LP+  LN + T  +   +    +  + + G     RR+R  H     CHD
Sbjct: 1239 LPEINLNMWTTCCDAMCSSSSTLARNAIGGDEKAKRRKRRHHHSKKSCHD 1288


>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical protein
            K09C8.5 protein.
          Length = 1328

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 20   LPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPV-RRRRPSHARCHDCHD 68
            LP+  LN + T  +   +    +  + + G     RR+R  H     CHD
Sbjct: 1239 LPEINLNMWTTCCDAMCSSSSTLARNAIGGDEKAKRRKRRHHHSKKSCHD 1288


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 21  PKTGLNSYPTLLEVCAAYPDIMIHSELA 48
           P   ++ Y  L+E  AA P I++HS +A
Sbjct: 518 PAEKMDEYKKLIEPSAAPPSIILHSFIA 545


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 21  PKTGLNSYPTLLEVCAAYPDIMIHSELA 48
           P   ++ Y  L+E  AA P I++HS +A
Sbjct: 518 PAEKMDEYKKLIEPSAAPPSIILHSFIA 545


>AF016678-2|AAB66153.1|  432|Caenorhabditis elegans Hypothetical
          protein K07E8.7 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 70 MIDRVPHINPPWECYR 85
          ++D V H+ P W CYR
Sbjct: 60 IVDGVRHLAPYWACYR 75


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 5   DSLASPIGHASIICILP--KTGLNSYP 29
           D L SP+ +  IIC+LP   + L  YP
Sbjct: 275 DFLPSPMDYRDIICLLPYISSSLTWYP 301


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine
          dna alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 50 CHPVRRRRPSHARCHDCHDAM 70
          CHPVR+ R S    H+ HD M
Sbjct: 70 CHPVRQPRESFYSSHE-HDPM 89


>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 52  PVRRRRPSHARCHDCHDAMIDRVPHINP 79
           P ++R+ SH   HD     ++R P ++P
Sbjct: 527 PAKKRKISHEEEHDPTPESVEREPTVSP 554


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 52  PVRRRRPSHARCHDCHDAMIDRVPHINP 79
           P ++R+ SH   HD     ++R P ++P
Sbjct: 527 PAKKRKISHEEEHDPTPESVEREPTVSP 554


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.139    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,978
Number of Sequences: 27539
Number of extensions: 93027
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 11
length of query: 95
length of database: 12,573,161
effective HSP length: 69
effective length of query: 26
effective length of database: 10,672,970
effective search space: 277497220
effective search space used: 277497220
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)