GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000789-TA|BGIBMGA000789-PA|undefined
         (95 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi...    29   0.62 
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    28   0.82 
At3g51050.1 68416.m05590 FG-GAP repeat-containing protein              27   1.9  
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    27   2.5  
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ...    27   2.5  
At2g47300.1 68415.m05905 hypothetical protein                          27   2.5  
At1g29790.1 68414.m03642 expressed protein                             26   3.3  
At3g12090.1 68416.m01505 senescence-associated family protein si...    26   4.3  

>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1017

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 24  GLNSYPTLLEVCAAYPDIMIHSEL 47
           GL+S+P LL+ CA   DI   SEL
Sbjct: 144 GLSSFPALLKACAKLRDIRSGSEL 167


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
          weak similarity to PhnP protein. (Swiss-Prot:P16692)
          [Escherichia coli]
          Length = 290

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 57 RPSHARCHDCHDAMIDRVPHINPPWEC 83
          +PS   CH C  ++   +PH+NP + C
Sbjct: 32 QPSDPPCHVCSQSL-SLLPHLNPNYRC 57


>At3g51050.1 68416.m05590 FG-GAP repeat-containing protein
          Length = 698

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 5   DSLASPIGHASIICILPKTGLNSYPTLLEVCAAYPD-----IMIHSELAGCHPVRRRRPS 59
           DS A  + H S+     KTGL  +    +   A+       I  H+     H +  R P 
Sbjct: 229 DSGAINLRHFSVYAFAGKTGLLRWSKKTDDVEAHTSDASQLIPQHNYKLDVHALNSRHPG 288

Query: 60  HARCHDCHDAMIDRVPH 76
              C +  ++++  +PH
Sbjct: 289 EFECREFRESILSVMPH 305


>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 35  CAAYPDIMIHSELAGCHPVRRRRP-----SHARCHDCHDAMIDRVPH 76
           C  +PD + H   +  HP+++  P     +  +CH C + ++D + H
Sbjct: 60  CIEWPDTIDHPSHSR-HPLKKVSPGTIDYTDGKCHFCREELVDPMYH 105


>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 539

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 35  CAAYPDIMIHSELAGCHPVRRRRP-----SHARCHDCHDAMIDRVPH 76
           C  +PD + H   +  HP+++  P     +  +CH C + ++D + H
Sbjct: 61  CIEWPDTIDHPSHSR-HPLKKVSPGTIDYTDGKCHFCREELVDPMYH 106


>At2g47300.1 68415.m05905 hypothetical protein
          Length = 344

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 20  LPKTGLNSYPTLLEVCAAYPDIMIHSELAGCHPVRRRRPSHARCHDCHDAMIDRVPHINP 79
           +PK GL  +P+    C AY    + SE A      +RRP   R          R+P I P
Sbjct: 164 VPKDGLPFFPSDFPDCKAYSSFTL-SEAADLEEKAQRRPPAIRPF--------RIP-IPP 213

Query: 80  PW 81
           PW
Sbjct: 214 PW 215


>At1g29790.1 68414.m03642 expressed protein
          Length = 378

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 30  TLLEVCAAYPDIMIHSELAGCHPVRRRR 57
           T   +C +  D++    L GCHP+ RRR
Sbjct: 123 TPFSLCPSDTDLVEKLILRGCHPLPRRR 150


>At3g12090.1 68416.m01505 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 282

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 41  IMIHSELAGCHPVRRRRPSHARCHDCHDAMIDRVPHINPPWECYRW 86
           ++I    AGC      R  HA  H  H +  +R+  + P W+ Y W
Sbjct: 229 LLIAVYAAGCCAFHNTR--HA-AHPYHPSDDNRMTRVRPRWDYYWW 271


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.139    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,413
Number of Sequences: 28952
Number of extensions: 83926
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 8
length of query: 95
length of database: 12,070,560
effective HSP length: 69
effective length of query: 26
effective length of database: 10,072,872
effective search space: 261894672
effective search space used: 261894672
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)