GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000788-TA|BGIBMGA000788-PA|IPR007274|Ctr copper
transporter
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    36   0.003
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    34   0.014
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   3.6  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   8.4  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 78  ILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKSECGTN 137
           I+F+ W   N  +   S +AI + G L+E L+ +     T             +   G  
Sbjct: 27  IVFKSWHIGNLSQFLLSLLAIAILGYLFERLRSFTSLKETE----------FQRGYAGQQ 76

Query: 138 SPCAGTAVVKYSMLSGGHIIQTC-LHFIQSTASYMLMLIFMTYNVWL 183
           S   G        L  G   + C L+ +Q   SY LML+ MTYN ++
Sbjct: 77  SE--GLLTHHSKSLKSGRPFRLCALYAVQLVFSYFLMLVAMTYNAYV 121


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 155 HIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFFFG 199
           H +++C + +Q   +Y+ ML+ M YN ++           YF FG
Sbjct: 205 HFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFG 249


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 64   HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASS 121
            H+      + +   IL   WK TN   L  SA        L++ L  YRE L    SS
Sbjct: 3338 HTQKQSLENSIKERILLMSWKDTNVYALKESAKKSH--AELFKVLHRYREVLRQPVSS 3393


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 131 KSECGTNSPCAGTAVVKYSMLSGGHIIQTCL 161
           KSE  TN+P  G + V + +  G  IIQ+ +
Sbjct: 546 KSEFLTNAPKDGASAVTWGVYPGREIIQSTI 576


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,232
Number of Sequences: 5004
Number of extensions: 25062
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 4
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)