GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000788-TA|BGIBMGA000788-PA|IPR007274|Ctr copper
transporter
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0896 + 22355097-22355627                                         37   0.011
09_04_0273 + 16292553-16293002                                         32   0.40 
11_06_0510 + 24420402-24422582                                         28   6.5  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   6.5  
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353...    28   6.5  

>08_02_0896 + 22355097-22355627
          Length = 176

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 25/86 (29%), Positives = 33/86 (38%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 127
           M F+      ILF GW+T+       S +A+FLA  LY+ L+  R  L       +    
Sbjct: 4   MSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLRAGRRHRAGGGG 63

Query: 128 NITKSECGTNSPCAGTAVVKYSMLSG 153
               S  G   P A  A    S   G
Sbjct: 64  GAASSAAGPVVPAASDARALLSAAGG 89


>09_04_0273 + 16292553-16293002
          Length = 149

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 127
           M F+      ILF GW+T        S VA+ LA   Y+ L+ +R  +   A  A  + +
Sbjct: 4   MTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLA-GAKPASI 62

Query: 128 NITKSECGTNSP--CAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYN 180
               S     +P     +A  ++       +    L  + S   Y+LML  M++N
Sbjct: 63  PPPASSDAARAPLLLPSSAAGRWP----ARLATAGLFGVNSGLGYLLMLAVMSFN 113


>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 83  WKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVN-ITKSECGTN 137
           WK+  ++ L   A+ +F+AGV     KY    L  RA+S    R + +T+ + G N
Sbjct: 131 WKSRPSMRLMSPAIIMFVAGV----TKYGERTLALRAASMDCLRSSMVTQPDPGPN 182


>10_01_0100 +
          1209424-1209538,1210373-1211073,1211158-1211379,
          1211452-1211878,1212091-1213219,1213623-1213746,
          1214207-1214278,1215480-1215578,1215617-1215640,
          1215704-1215745,1215815-1215895,1215983-1216114,
          1216115-1216196,1216271-1216365,1218499-1218570,
          1218676-1218792,1219379-1219447,1219521-1219587,
          1219886-1220025
          Length = 1269

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 60 AGHDHSHAMVFHSCVCTEILFQG 82
          +GH      VF SC CTE+L  G
Sbjct: 30 SGHTSLRVSVFDSCFCTEVLPHG 52


>01_07_0064 +
           40834649-40834786,40834934-40834997,40835333-40835391,
           40835602-40835677,40835775-40835846,40837641-40837728,
           40838239-40838497,40838766-40839000,40839447-40839470,
           40839910-40839997,40840110-40840300,40841082-40841322,
           40841803-40842556
          Length = 762

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 83  WKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKSECGTN--SPC 140
           W   +   L G A A   A V    ++  REAL   A +A   R++I  +  G       
Sbjct: 543 WNAADGGGLGGGAAAPVTASVCDVSVRGDREALVAAARAALGGRLDILVNNVGQTLFGAA 602

Query: 141 AGTAVVKYSMLSGGHIIQTCLHFIQ 165
           A  A   Y+ +   + +++C H  Q
Sbjct: 603 AACAAEDYARIMATN-LESCFHLAQ 626


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,393,216
Number of Sequences: 37544
Number of extensions: 167295
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 14,793,348
effective HSP length: 79
effective length of query: 134
effective length of database: 11,827,372
effective search space: 1584867848
effective search space used: 1584867848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)