GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000788-TA|BGIBMGA000788-PA|IPR007274|Ctr copper
transporter
         (213 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      36   0.033
SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092)                    32   0.41 
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)         29   3.8  

>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 86  TNALELFGSAVAIFLAGVLYEGLKYYREALHTR 118
           T+   + GS +A+F+  VLYEGLK  RE L  R
Sbjct: 122 TSTPGMIGSCIAVFILAVLYEGLKVSREMLKRR 154


>SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092)
          Length = 267

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 77  EILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKS 132
           ++LF+ WK +++  L GS   +F   +L E ++  R  +  + +S + +     K+
Sbjct: 151 QLLFEDWKLSSSTILIGSCAGVFFLSILSECVRALRSRIADQTTSENPNATTTYKT 206


>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
          Length = 618

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 130 TKSECGTNSPCAGTAVVK--YSMLS-----GGHIIQTCLHFIQSTASYMLMLIF 176
           T S CGTN  C  T V+K  +S+++      G  IQ  L    S++S+ +  ++
Sbjct: 170 TVSSCGTNHSCGVTIVLKSCFSLINCWRDISGRFIQAELSHTSSSSSFRIACVY 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,184,492
Number of Sequences: 59808
Number of extensions: 193228
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 3
length of query: 213
length of database: 16,821,457
effective HSP length: 79
effective length of query: 134
effective length of database: 12,096,625
effective search space: 1620947750
effective search space used: 1620947750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)