GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000788-TA|BGIBMGA000788-PA|IPR007274|Ctr copper
transporter
         (213 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-3|ABP57819.1|  147|Caenorhabditis elegans Hypothetical ...    62   2e-10
Z68217-2|CAA92470.2|  134|Caenorhabditis elegans Hypothetical pr...    58   4e-09
U80441-7|AAB37655.1|  252|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z68217-5|CAC70098.1|  166|Caenorhabditis elegans Hypothetical pr...    54   6e-08
Z68217-7|CAI59117.1|  156|Caenorhabditis elegans Hypothetical pr...    54   8e-08
U80441-6|AAT68894.1|  256|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF043701-4|ABP57821.1|  132|Caenorhabditis elegans Hypothetical ...    48   5e-06
U55856-1|AAA98020.1|  162|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical ...    45   5e-05
AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical ...    40   0.001

>AF043701-3|ABP57819.1|  147|Caenorhabditis elegans Hypothetical
           protein K12C11.3 protein.
          Length = 147

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 78  ILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKSECGTN 137
           ILF+ WK  +   +  S   +  AG L E LKY + A   +   A D      +++ G  
Sbjct: 29  ILFENWKVQDMTTMIWSCFVVGFAGFLLEFLKYSKWAASMQMRPAGDVD---RRTKYGG- 84

Query: 138 SPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFF 197
             C   +  +  +    H++Q   HF Q+  +++LM I+MT+NV++C          YFF
Sbjct: 85  --CVVPSENRKKLFWARHVVQAMYHFWQTLLAFILMNIYMTFNVYICLSLCLGLTIGYFF 142

Query: 198 FG 199
           FG
Sbjct: 143 FG 144


>Z68217-2|CAA92470.2|  134|Caenorhabditis elegans Hypothetical
           protein F58G6.3 protein.
          Length = 134

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 21/133 (15%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRAS-SASDSR 126
           M FH+     +LF  W  T+A ++  + + + +AG++ E +KY R  +  R S S  +S 
Sbjct: 18  MWFHTKPQDTVLFSTWNITSAGKMVWACILVAIAGIILEAIKYNRRLIQKRQSPSKKESY 77

Query: 127 VNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXX 186
           ++                     +LS  H  QT L F+Q   SY LMLIFMT+++WL   
Sbjct: 78  IS--------------------RLLSTMHFFQTFLFFVQLGFSYCLMLIFMTFSIWLGLA 117

Query: 187 XXXXXXXXYFFFG 199
                   +  FG
Sbjct: 118 VVIGLSIGFLIFG 130


>U80441-7|AAB37655.1|  252|Caenorhabditis elegans Hypothetical
           protein F27C1.2a protein.
          Length = 252

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 23/161 (14%)

Query: 61  GHD-HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYR---EALH 116
           GH+ H   M FH      ILF  W+T +   +  S  AIF+ G  YEG+K++R   +   
Sbjct: 70  GHEGHMMKMWFHGGFEEVILFDFWRTDSLFGMLLSCAAIFIMGATYEGVKWFRVFLQMTQ 129

Query: 117 TRAS-SASDSRVNITKSECGT----------NSPCAGTAVVKYSM--------LSGGHII 157
           T+A   A+ S V  T+S  GT          N P +   ++  S+         S   +I
Sbjct: 130 TQAQVLANKSCVETTRSSGGTCHQSVTHSQSNKPQSEPFLISASVARTPATSPFSPQRLI 189

Query: 158 QTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFFF 198
           Q  L+  Q   +Y LMLI MTYN +L           ++ F
Sbjct: 190 QMLLYIFQLVLAYWLMLIVMTYNTYLTAAVVLGAGFGHWLF 230


>Z68217-5|CAC70098.1|  166|Caenorhabditis elegans Hypothetical
           protein F58G6.7 protein.
          Length = 166

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRA-------- 119
           M FH  +   ILF+ WK  N      S + IFL     E LK+ R  L  +         
Sbjct: 8   MYFHFRIEEPILFREWKPLNTTAYVFSCIEIFLIAFCLEALKFGRTKLSPKVKIVEKKVD 67

Query: 120 ---SSASDSRVNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIF 176
              S+  D   NI ++   T          + S++S  H+  + L F+Q    Y LML+ 
Sbjct: 68  CCCSTEKDGLWNIPETIPLTQKTVTLAPFTRDSLISKFHMASSLLVFVQHFIDYSLMLVS 127

Query: 177 MTYNVWLCXXXXXXXXXXYFFFG 199
           MTYN  +           YFF G
Sbjct: 128 MTYNWPIFLSLLAGHTTGYFFLG 150


>Z68217-7|CAI59117.1|  156|Caenorhabditis elegans Hypothetical
           protein F58G6.9 protein.
          Length = 156

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 64  HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSAS 123
           H   M +H  V   +LF+ W   +A  +  +   +  AG+L E LKY R A   R     
Sbjct: 19  HRMWMWYHVDVEDTVLFKSWTVFDAGTMVWTCFVVAAAGILLEALKYARWATEERMKIDQ 78

Query: 124 DSRVNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWL 183
           ++  + TK   G   P       KY+     HII +  HF Q   +Y+LM ++M ++V++
Sbjct: 79  ENVDSKTKYG-GIKIPGKSE---KYNFWKR-HIIDSLYHFWQLLLAYILMNVYMVFSVYI 133

Query: 184 CXXXXXXXXXXYFFF 198
           C          +F F
Sbjct: 134 CLSLCFGLAIGHFVF 148


>U80441-6|AAT68894.1|  256|Caenorhabditis elegans Hypothetical
           protein F27C1.2b protein.
          Length = 256

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 27/165 (16%)

Query: 61  GHD-HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYR---EALH 116
           GH+ H   M FH      ILF  W+T +   +  S  AIF+ G  YEG+K++R   +   
Sbjct: 70  GHEGHMMKMWFHGGFEEVILFDFWRTDSLFGMLLSCAAIFIMGATYEGVKWFRVFLQMTQ 129

Query: 117 TRA-----SSASDSRVNITKSECGT----------NSPCAGTAVVKYSM--------LSG 153
           T+A      S  +  +  T+S  GT          N P +   ++  S+         S 
Sbjct: 130 TQAQVLANKSCVEFALQTTRSSGGTCHQSVTHSQSNKPQSEPFLISASVARTPATSPFSP 189

Query: 154 GHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFFF 198
             +IQ  L+  Q   +Y LMLI MTYN +L           ++ F
Sbjct: 190 QRLIQMLLYIFQLVLAYWLMLIVMTYNTYLTAAVVLGAGFGHWLF 234


>AF043701-4|ABP57821.1|  132|Caenorhabditis elegans Hypothetical
           protein K12C11.6 protein.
          Length = 132

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 16/132 (12%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 127
           M FH+     +LF+ W  T+   +      I +AG+L E +K+ R  +          + 
Sbjct: 11  MWFHTKTQDTVLFKTWNVTDTPTMVWVCCIIVVAGILLELIKFLRWKIE---------KW 61

Query: 128 NITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXX 187
           +  + E  + S  +        + S  HI QT L  +Q + SY+LML+FMT++VWL    
Sbjct: 62  HKNRDELVSRSYIS-------RLFSPIHIGQTILFMVQLSFSYILMLLFMTFSVWLGIAV 114

Query: 188 XXXXXXXYFFFG 199
                  Y  FG
Sbjct: 115 VVGLGIGYLAFG 126


>U55856-1|AAA98020.1|  162|Caenorhabditis elegans Hypothetical
           protein F31E8.4 protein.
          Length = 162

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 13/158 (8%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREAL-----HTRASSA 122
           M  H     +ILF  WKT +   +  S +  FL  +LYE +K +R  L       R    
Sbjct: 5   MTLHFGEREKILFSWWKTGSLSGMAVSMLITFLLCILYEAIKSFRYFLAVWNNQKRQQRH 64

Query: 123 SDSRVNITKSECGTNSPCAGTAVVKYSMLSGG--------HIIQTCLHFIQSTASYMLML 174
           +++ +   ++  G N       +     LSG          + Q  L+ +Q+  +Y LML
Sbjct: 65  AEASITNPQNSGGDNISEDSIHIAPLVQLSGFTKRLFTSYRLAQGALYGLQALLAYTLML 124

Query: 175 IFMTYNVWLCXXXXXXXXXXYFFFGWKKNTVVDMTEHC 212
           I MTYN+ L           YF F         +T+ C
Sbjct: 125 IAMTYNMNLILSIVVGEAVGYFLFTGNPLVEQHLTDCC 162


>AF043701-5|ABP57822.1|  166|Caenorhabditis elegans Hypothetical
           protein K12C11.7 protein.
          Length = 166

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALH--TRASSASDS 125
           M FH  +   ILF+ WK T+      S +++F      E LK+ R+ +    +   A D 
Sbjct: 8   MYFHFRIQEPILFRQWKPTDTTGYVFSCISLFFIAFCLELLKFGRQRMTRTVKEKLAVDC 67

Query: 126 RVNITKS--------ECGTNSPCAGTA-VVKYSMLSGGHIIQTCLHFIQSTASYMLMLIF 176
             +  +         E       A  A     S+ S  H   + L F+Q+   Y LML+ 
Sbjct: 68  CCSTPEGIWEIPEEPEPSPRGKLASLAPFTMESISSWRHFASSFLFFLQNFVDYSLMLVA 127

Query: 177 MTYNVWLCXXXXXXXXXXYFFFG 199
           MTYN  L           YFF G
Sbjct: 128 MTYNYPLFFSLLAGHAIGYFFVG 150


>AC006807-1|AAK84615.1|  130|Caenorhabditis elegans Hypothetical
           protein Y58A7A.1 protein.
          Length = 130

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 127
           M FH      ILF  WKT  A+ +  +     L   L E L+++R+    R +     + 
Sbjct: 1   MSFHFGTEETILFDFWKTETAVGIAVACFITVLLAFLMETLRFFRDY---RKAQTQLHQP 57

Query: 128 NITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLC 184
            I+  +    SP                +I   L   Q T +Y LMLIFMT+N +LC
Sbjct: 58  PISPEDRLKRSPQLD-------------LIDPLLQLFQLTIAYFLMLIFMTFNAYLC 101


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,535,607
Number of Sequences: 27539
Number of extensions: 142262
Number of successful extensions: 361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 16
length of query: 213
length of database: 12,573,161
effective HSP length: 78
effective length of query: 135
effective length of database: 10,425,119
effective search space: 1407391065
effective search space used: 1407391065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)