GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000788-TA|BGIBMGA000788-PA|IPR007274|Ctr copper
transporter
         (213 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 76  TEILFQGWKTTNALELFGS 94
           T+ + QG++TT + ++FGS
Sbjct: 278 TKAINQGFRTTKSSKMFGS 296


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 87 NALELFGSAVAIF 99
          NAL+LFGS  A+F
Sbjct: 55 NALDLFGSPDAMF 67


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,997
Number of Sequences: 429
Number of extensions: 1397
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 213
length of database: 140,377
effective HSP length: 55
effective length of query: 158
effective length of database: 116,782
effective search space: 18451556
effective search space used: 18451556
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)