GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000788-TA|BGIBMGA000788-PA|IPR007274|Ctr copper
transporter
         (213 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20650.1 68418.m02453 copper transporter family protein simil...    37   0.009
At5g59040.1 68418.m07397 copper transporter family protein simil...    32   0.33 
At3g46900.1 68416.m05090 copper transporter, putative similar to...    29   1.8  
At2g26975.1 68415.m03236 copper transporter, putative similar to...    28   5.5  

>At5g20650.1 68418.m02453 copper transporter family protein similar
           to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family
          Length = 146

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 68  MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 127
           M F+  +   ILF  WKT + L    + +A F+    Y+ L+  R  +  ++ S+S    
Sbjct: 4   MTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRR--IQFKSLSSSRRAP 61

Query: 128 NITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYN 180
              +S  G ++P     + K    S        L  + +   Y+LML  M++N
Sbjct: 62  PPPRSSSGVSAP----LIPKSGTRSAAKAASVLLFGVNAAIGYLLMLAAMSFN 110


>At5g59040.1 68418.m07397 copper transporter family protein similar
           to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family
          Length = 151

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 153 GGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFFFGWKKNTVVDMTEHC 212
           GG ++QT ++ +++  SY++ML  M++N  +           +  FG +         H 
Sbjct: 86  GGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNSHT 145

Query: 213 Q 213
           +
Sbjct: 146 E 146


>At3g46900.1 68416.m05090 copper transporter, putative similar to
           SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family
          Length = 158

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 55  SDDPCAGHDHSHAMVFHSCVC----TEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKY 110
           S    + H   H M+ H        TE+LF GW  T++       + IFL  V+ E L +
Sbjct: 15  SSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAH 74



 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 156 IIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFFFG 199
           + QT ++ +++  SY++ML  M++N  +           +F FG
Sbjct: 90  LAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFG 133


>At2g26975.1 68415.m03236 copper transporter, putative similar to
           SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family
          Length = 145

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 54  NSDDPCAGHDHSHAMVFHSCVC----TEILFQGWKTTNALELFGSAVAIFLAGVLYEGLK 109
           +S      H +S+ ++ H        TEILF GW  T+        + +FL  V+ E L 
Sbjct: 9   SSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLA 68

Query: 110 Y 110
           +
Sbjct: 69  H 69


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.134    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,260,586
Number of Sequences: 28952
Number of extensions: 130656
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 6
length of query: 213
length of database: 12,070,560
effective HSP length: 78
effective length of query: 135
effective length of database: 9,812,304
effective search space: 1324661040
effective search space used: 1324661040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)