Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000787-TA|BGIBMGA000787-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    28   0.82 
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    25   5.8  

>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 83  SKPRVTTPKVVSYIKQLKAKDPGIFAWE 110
           S P  + P  V Y K+L+ KD GI  WE
Sbjct: 87  SAPITSKPAQVFYSKKLERKDEGIRKWE 114


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 99  LKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKLGG 142
           + A  PGI   E  +RL+A  +  K NV   S+++R L   +GG
Sbjct: 1   MSASHPGILH-EYTERLVAFELVGKSNVTLTSNVTRSLLLFVGG 43


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.142    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,967
Number of Sequences: 5004
Number of extensions: 24196
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 2,362,478
effective HSP length: 69
effective length of query: 130
effective length of database: 2,017,202
effective search space: 262236260
effective search space used: 262236260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)