GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000787-TA|BGIBMGA000787-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (199 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.       192   1e-51
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   2.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score =  192 bits (469), Expect = 1e-51
 Identities = 89/125 (71%), Positives = 105/125 (84%)

Query: 17  VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
           VNQLGGVF+NGRPLPN +RL+IVE+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI 
Sbjct: 42  VNQLGGVFINGRPLPNHIRLKIVEMAANGIRPCVISRQLRVSHGCVSKILNRYQETGSIR 101

Query: 77  PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
           PG IGGSKPRV TP+V + I+Q K ++P IF+WEIRDRL+ +G+CD+   PSVS+ISR+L
Sbjct: 102 PGVIGGSKPRVATPEVENRIEQYKRENPSIFSWEIRDRLVKEGICDRSTAPSVSAISRLL 161

Query: 137 RNKLG 141
           R K G
Sbjct: 162 RGKGG 166


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 69  YHETGSILPGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAW 109
           +H  G IL G I     R   P  V     +  +DP  F W
Sbjct: 362 FHNMGHILIGYIHDPDHRFLEPFGVMADPAVDLRDPLFFRW 402


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 25  VNGRPLPNAVRLRIVELAQLGIRPCDISRQLRV 57
           V G  L NAV      +A    +PC I+  L++
Sbjct: 185 VKGAMLTNAVCFVPGVVAMFSRKPCSINENLKM 217


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 25  VNGRPLPNAVRLRIVELAQLGIRPCDISRQLRV 57
           V G  L NAV      +A    +PC I+  L++
Sbjct: 185 VKGAMLTNAVCFVPGVVAMFSRKPCSINENLKM 217


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.142    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,853
Number of Sequences: 317
Number of extensions: 1262
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 114,650
effective HSP length: 54
effective length of query: 145
effective length of database: 97,532
effective search space: 14142140
effective search space used: 14142140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)