GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000787-TA|BGIBMGA000787-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1188 + 25053594-25054941,25055025-25055650                       30   1.5  
05_03_0463 + 14334409-14334568,14334736-14334911,14335274-143353...    28   5.9  
07_03_0254 + 15857809-15858018,15858151-15858264,15859809-158600...    27   7.8  

>08_02_1188 + 25053594-25054941,25055025-25055650
          Length = 657

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 21  GGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCV--SKIL----ARYHETGS 74
           GG   +  PLP ++RL IV+ A  G+         R  HGC+  SKIL     R H +G 
Sbjct: 450 GGPTASPTPLPWSMRLSIVQGAARGLAYLHECSPRRYVHGCIKSSKILLDDELRAHVSGF 509

Query: 75  ILPGAIGG 82
            L   + G
Sbjct: 510 GLARLVAG 517


>05_03_0463 +
           14334409-14334568,14334736-14334911,14335274-14335357,
           14335374-14335685
          Length = 243

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 28  RPLPNAVRLRIVELAQLGIRPCDISRQLRVSHG 60
           R L +A +  +VEL   G+R C+I   +  +HG
Sbjct: 76  RNLSDAQKAEVVELGVCGLRTCNIMDVMEKNHG 108


>07_03_0254 +
           15857809-15858018,15858151-15858264,15859809-15860010,
           15860245-15860319,15860406-15860498,15860554-15860636,
           15861067-15861180,15861632-15861746,15861840-15862030,
           15862102-15862218,15862514-15862594,15862729-15862964,
           15863219-15863258,15863393-15863968
          Length = 748

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 77  PGAIGGSKPRVTTPKVVSYIKQLKAKD--PGIFAWEIRDRLLADGVCDKYNVPSVSSISR 134
           P  IG  +  +T   V + +  L      P   A ++R   L +   + Y+VP +SS++ 
Sbjct: 653 PDDIGRLRAVITRDWVKNAVSPLLDSSLFPADRANQVRYDPLENVSIEIYDVPGISSLNV 712

Query: 135 ILRNKLGGG 143
           ++RN L GG
Sbjct: 713 VVRNILDGG 721


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.142    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,408,538
Number of Sequences: 37544
Number of extensions: 209894
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 3
length of query: 199
length of database: 14,793,348
effective HSP length: 78
effective length of query: 121
effective length of database: 11,864,916
effective search space: 1435654836
effective search space used: 1435654836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)