Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000787-TA|BGIBMGA000787-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
(199 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 194 3e-50
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 172 2e-43
SB_5629| Best HMM Match : PAX (HMM E-Value=0) 168 3e-42
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 1e-41
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 7e-29
SB_18288| Best HMM Match : PAX (HMM E-Value=0.058) 78 4e-15
SB_23394| Best HMM Match : PAX (HMM E-Value=0.19) 43 1e-04
SB_47732| Best HMM Match : Pkinase (HMM E-Value=0.0016) 36 0.017
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 36 0.017
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25) 36 0.017
SB_58246| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 36 0.017
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 36 0.017
SB_32926| Best HMM Match : DUF310 (HMM E-Value=7.4) 36 0.017
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 36 0.017
SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_33487| Best HMM Match : Transposase_8 (HMM E-Value=0.86) 33 0.21
SB_22875| Best HMM Match : Transposase_8 (HMM E-Value=0.86) 33 0.21
SB_22670| Best HMM Match : Pkinase (HMM E-Value=0) 29 3.4
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 194 bits (474), Expect = 3e-50
Identities = 91/124 (73%), Positives = 106/124 (85%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVFVNGRPLP+ VR RIVELAQ G+RPCDISRQLRVSHGCVSKIL R++ETGSI
Sbjct: 113 VNQLGGVFVNGRPLPDVVRQRIVELAQSGVRPCDISRQLRVSHGCVSKILCRFYETGSIK 172
Query: 77 PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
PG IGGSKP+V T VV+ I + K +P +FAWEIRDRLL++GVC NVPSVSSI+RI+
Sbjct: 173 PGVIGGSKPKVATGNVVTKIAEYKLANPTMFAWEIRDRLLSEGVCTSDNVPSVSSINRIV 232
Query: 137 RNKL 140
RN++
Sbjct: 233 RNRI 236
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 172 bits (418), Expect = 2e-43
Identities = 76/125 (60%), Positives = 103/125 (82%), Gaps = 1/125 (0%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVF+NGRPLP +R +I+ELAQLG+RPCDISR+LRVSHGCVSKIL R+ +TGSI
Sbjct: 12 VNQLGGVFINGRPLPLVLRKQIIELAQLGVRPCDISRRLRVSHGCVSKILYRFQQTGSIE 71
Query: 77 PGAIGGSK-PRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRI 135
PGAI GS PR TP++ I + + ++PG+F+WE+RDRL+ D VC + VPS+++IS++
Sbjct: 72 PGAIAGSSTPRNVTPEIEEKIDEYRRENPGMFSWEVRDRLVKDNVCSRCTVPSLAAISQV 131
Query: 136 LRNKL 140
L+N++
Sbjct: 132 LKNRI 136
Score = 157 bits (382), Expect = 4e-39
Identities = 71/123 (57%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 16 EVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 75
++NQLGGVF+NG+PLP +RLRI+ELA+LG+RP DISR+LRVSHGCVSKIL ++HETGS+
Sbjct: 281 KINQLGGVFINGKPLPRPLRLRIIELARLGVRPSDISRRLRVSHGCVSKILNKFHETGSV 340
Query: 76 LPG-AIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 134
PG AI K R +P V++ I++ + P IF+WE+RDRLL D +C K NVPS+ ++S
Sbjct: 341 EPGAAITTFKRRDISPAVLNKIEEYVFEQPDIFSWEVRDRLLKDKLCSKCNVPSLEAVSN 400
Query: 135 ILR 137
+++
Sbjct: 401 VIK 403
>SB_5629| Best HMM Match : PAX (HMM E-Value=0)
Length = 383
Score = 168 bits (408), Expect = 3e-42
Identities = 69/128 (53%), Positives = 104/128 (81%)
Query: 16 EVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 75
+VNQLGG +VNG+PLP +R++I+ELA+ G+RPC+ISR+L+++HGC+SK+LA++ +TGS+
Sbjct: 56 KVNQLGGGYVNGKPLPREIRIQIIELARSGVRPCEISRRLKITHGCISKLLAKFQKTGSL 115
Query: 76 LPGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRI 135
PG + +PRV T ++ I Q +A+ PGIF+WEIRD+LL +G+CD+ VPS+SSISRI
Sbjct: 116 EPGTVYKGRPRVVTSQIEKKIDQYRAEQPGIFSWEIRDQLLQEGICDRSEVPSLSSISRI 175
Query: 136 LRNKLGGG 143
++ K+ G
Sbjct: 176 VKRKVSEG 183
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 166 bits (403), Expect = 1e-41
Identities = 80/105 (76%), Positives = 90/105 (85%)
Query: 34 VRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVV 93
+R RIVELA G+RP +ISRQL VSHGCVSKIL RY+ETGS+ PGAIGGSKP+V TPKVV
Sbjct: 1 MRHRIVELAHCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKVV 60
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRN 138
S I + K K+P IFAWEIR+ LLADGVCDK NVPSVSSI+RILRN
Sbjct: 61 SKILEYKDKNPCIFAWEIRNNLLADGVCDKTNVPSVSSINRILRN 105
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 124 bits (298), Expect = 7e-29
Identities = 58/102 (56%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
Query: 37 RIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPG-AIGGSKPRVTTPKVVSY 95
RI+ELA+LG+RP DISR+LRVSHGCVSKIL ++HETGS+ PG AI K R +P V++
Sbjct: 344 RIIELARLGVRPSDISRRLRVSHGCVSKILNKFHETGSVEPGAAITTFKRRDISPAVLNK 403
Query: 96 IKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILR 137
I++ + P IF+WEIRDRLL D +C K NVPS+ ++S +++
Sbjct: 404 IEEYVFEQPDIFSWEIRDRLLKDKLCSKCNVPSLEAVSNVIK 445
>SB_18288| Best HMM Match : PAX (HMM E-Value=0.058)
Length = 51
Score = 78.2 bits (184), Expect = 4e-15
Identities = 38/50 (76%), Positives = 42/50 (84%)
Query: 87 VTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
V TPKVVS I + K K+P IFAWEIR+ LLADGVCDK NVPSVSSI+RIL
Sbjct: 1 VATPKVVSKILEYKDKNPCIFAWEIRNNLLADGVCDKTNVPSVSSINRIL 50
>SB_23394| Best HMM Match : PAX (HMM E-Value=0.19)
Length = 102
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 50 DISRQLRVSHGCVSKILARYHETG-SIL-PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIF 107
+I Q VS V K++ RY+E SIL P G PR +I+ + P I
Sbjct: 13 EIVTQPPVSRPYVDKVVKRYNEANVSILAPKTTPG--PRKIDTAASEFIEVERLMKPSID 70
Query: 108 AWEIRDRLLADGVCDKYNVPSVSSISRILR 137
EI+ RL DGV + ++P +S I+++ R
Sbjct: 71 GKEIQQRLFLDGVLQQNDIPPISQINKVFR 100
>SB_47732| Best HMM Match : Pkinase (HMM E-Value=0.0016)
Length = 318
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 216 SYIKQLKNDDPGVADFKVDDRIISDG 241
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 222 SYIKQLKNDDPGVADFKVDDRIISDG 247
>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
Length = 863
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 339 SYIKQLKNDDPGVADFKVDDRIISDG 364
>SB_58246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 146 SYIKQLKNDDPGVADFKVDDRIISDG 171
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 12 SYIKQLKNDDPGVADFKVDDRIISDG 37
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 378 SYIKQLKNDDPGVADFKVDDRIISDG 403
>SB_32926| Best HMM Match : DUF310 (HMM E-Value=7.4)
Length = 316
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 241 SYIKQLKNDDPGVADFKVDDRIISDG 266
>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 241 SYIKQLKNDDPGVADFKVDDRIISDG 266
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 97 SYIKQLKNDDPGVADFKVDDRIISDG 122
>SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 94 SYIKQLKAKDPGIFAWEIRDRLLADG 119
SYIKQLK DPG+ +++ DR+++DG
Sbjct: 144 SYIKQLKNDDPGVADFKVDDRIISDG 169
>SB_33487| Best HMM Match : Transposase_8 (HMM E-Value=0.86)
Length = 299
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 16 EVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 75
+++ L VF+NG ++ L L RPC + R R + GC ++L R G
Sbjct: 34 KLSNLAEVFINGECCKIQTKVLRTILEYLATRPCQVGRVWRQTDGCQLEVL-REEWVGMQ 92
Query: 76 LPGAIGGSKP 85
A+ ++P
Sbjct: 93 FETAVSQTRP 102
>SB_22875| Best HMM Match : Transposase_8 (HMM E-Value=0.86)
Length = 649
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 16 EVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 75
+++ L VF+NG ++ L L RPC + R R + GC ++L R G
Sbjct: 338 KLSNLAEVFINGECCKIQTKVLRTILEYLATRPCQVGRVWRQTDGCQLEVL-REEWVGMQ 396
Query: 76 LPGAIGGSKP 85
A+ ++P
Sbjct: 397 FETAVSQTRP 406
>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 662
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 90 PKVVSYIKQLKAKDPGIFAWEIRDRLLAD--GVCDKYNVPSVSSIS 133
P+ S K + WEI R ++D G+C++Y VP ++S
Sbjct: 557 PESFSAYKMADMYSFALVLWEISRRCISDETGLCEEYEVPYFDAVS 602
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.142 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,524,274
Number of Sequences: 59808
Number of extensions: 189723
Number of successful extensions: 322
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 21
length of query: 199
length of database: 16,821,457
effective HSP length: 79
effective length of query: 120
effective length of database: 12,096,625
effective search space: 1451595000
effective search space used: 1451595000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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