Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000787-TA|BGIBMGA000787-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
(199 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53336-9|AAA96181.1| 257|Caenorhabditis elegans Pax (paired box... 208 3e-54
U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box... 183 7e-47
Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical pr... 180 5e-46
AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein p... 180 5e-46
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 178 2e-45
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 178 2e-45
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 131 4e-31
Z48582-6|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 131 4e-31
U40955-1|AAA81747.3| 233|Caenorhabditis elegans Hypothetical pr... 94 7e-20
Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical pr... 68 4e-12
Z54235-5|CAA90976.2| 202|Caenorhabditis elegans Hypothetical pr... 59 2e-09
Z73105-3|CAA97441.2| 205|Caenorhabditis elegans Hypothetical pr... 56 1e-08
U23518-3|AAC70885.1| 109|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81531-7|CAB04320.1| 722|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 27 9.1
U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal prote... 27 9.1
>U53336-9|AAA96181.1| 257|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 1 protein.
Length = 257
Score = 208 bits (507), Expect = 3e-54
Identities = 94/129 (72%), Positives = 111/129 (86%)
Query: 16 EVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 75
EVNQLGGVFVNGRPLP +R +IVEL++ G RPCDISRQL++SHGCVSKIL R+ E G+I
Sbjct: 64 EVNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHGCVSKILTRFSENGTI 123
Query: 76 LPGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRI 135
+PG IGGS+PRVTTPKVV YI+ LK DPGIFAWEIRDRL++ +CD+ N+PSVSSISRI
Sbjct: 124 MPGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRANLPSVSSISRI 183
Query: 136 LRNKLGGGA 144
LRNK GG +
Sbjct: 184 LRNKNGGNS 192
>U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 2 protein.
Length = 351
Score = 183 bits (446), Expect = 7e-47
Identities = 83/123 (67%), Positives = 101/123 (82%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVFVNGRPLP+ +R +IVE++Q G RPCDISRQL+VSHGCVSKIL RY+ TGS+
Sbjct: 95 VNQLGGVFVNGRPLPDTIRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTGSVR 154
Query: 77 PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
PG IGGSKP+V TP+VV I K +P +FAWEIR +L+ D +C + NVPSVSSI+RI+
Sbjct: 155 PGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSINRIV 214
Query: 137 RNK 139
RNK
Sbjct: 215 RNK 217
>Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical
protein C04G2.7 protein.
Length = 289
Score = 180 bits (439), Expect = 5e-46
Identities = 83/123 (67%), Positives = 100/123 (81%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVFVNGRPL + VR +IVE++Q G RPCDISRQL+VSHGCVSKIL RY+ TGS+
Sbjct: 33 VNQLGGVFVNGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTGSVR 92
Query: 77 PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
PG IGGSKP+V TP+VV I K +P +FAWEIR +L+ D +C + NVPSVSSI+RI+
Sbjct: 93 PGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSINRIV 152
Query: 137 RNK 139
RNK
Sbjct: 153 RNK 155
>AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein
protein.
Length = 289
Score = 180 bits (439), Expect = 5e-46
Identities = 83/123 (67%), Positives = 100/123 (81%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVFVNGRPL + VR +IVE++Q G RPCDISRQL+VSHGCVSKIL RY+ TGS+
Sbjct: 33 VNQLGGVFVNGRPLADTVRAQIVEMSQHGTRPCDISRQLKVSHGCVSKILGRYYSTGSVR 92
Query: 77 PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
PG IGGSKP+V TP+VV I K +P +FAWEIR +L+ D +C + NVPSVSSI+RI+
Sbjct: 93 PGVIGGSKPKVATPRVVECIAGYKRANPTMFAWEIRQKLIEDQICGEENVPSVSSINRIV 152
Query: 137 RNK 139
RNK
Sbjct: 153 RNK 155
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 178 bits (434), Expect = 2e-45
Identities = 84/122 (68%), Positives = 98/122 (80%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVFVNGRPLP+A R RIV+LA G RPCDISR L+VS+GCVSKIL RY+E+G+I
Sbjct: 9 VNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESGTIR 68
Query: 77 PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
P AIGGSKPRV T VV I+ K P IFAWEIRD+LLAD +C+ +PSVSSI+R+L
Sbjct: 69 PRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSINRVL 128
Query: 137 RN 138
RN
Sbjct: 129 RN 130
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 178 bits (434), Expect = 2e-45
Identities = 84/122 (68%), Positives = 98/122 (80%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVFVNGRPLP+A R RIV+LA G RPCDISR L+VS+GCVSKIL RY+E+G+I
Sbjct: 9 VNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESGTIR 68
Query: 77 PGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 136
P AIGGSKPRV T VV I+ K P IFAWEIRD+LLAD +C+ +PSVSSI+R+L
Sbjct: 69 PRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSINRVL 128
Query: 137 RN 138
RN
Sbjct: 129 RN 130
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 131 bits (316), Expect = 4e-31
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVF+NGRPLP VR I+ +A+ GI+PC ISRQL+VSHG VSKIL RY ETGSI
Sbjct: 17 VNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSIS 76
Query: 77 PGAIGGS-KPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRI 135
PG IGGS + R+T V I ++P + A E+RD L+ +C K N P+V +I R+
Sbjct: 77 PGQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRL 136
Query: 136 LRNK 139
+ NK
Sbjct: 137 IGNK 140
>Z48582-6|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 131 bits (316), Expect = 4e-31
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Query: 17 VNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSIL 76
VNQLGGVF+NGRPLP VR I+ +A+ GI+PC ISRQL+VSHG VSKIL RY ETGSI
Sbjct: 17 VNQLGGVFINGRPLPIHVRHAIISMAKKGIKPCHISRQLKVSHGAVSKILNRYAETGSIS 76
Query: 77 PGAIGGS-KPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRI 135
PG IGGS + R+T V I ++P + A E+RD L+ +C K N P+V +I R+
Sbjct: 77 PGQIGGSPRARLTVQAVEKEILIACDENPQMSAAELRDWLIHKDICTKGNAPTVPAIKRL 136
Query: 136 LRNK 139
+ NK
Sbjct: 137 IGNK 140
>U40955-1|AAA81747.3| 233|Caenorhabditis elegans Hypothetical
protein F48B9.5 protein.
Length = 233
Score = 93.9 bits (223), Expect = 7e-20
Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 3/123 (2%)
Query: 18 NQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILP 77
NQLG + G PL R IV+L Q G + CDIS++L V+H CVSKIL RY +TGS+ P
Sbjct: 102 NQLGRTYSPGLPLSMCEREEIVKLFQGGWKICDISKRLCVTHSCVSKILNRYRQTGSVKP 161
Query: 78 GAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILR 137
+ R +P V++ ++ +++ EIR++L+ DGVC + N PS SSI+ ILR
Sbjct: 162 K--DAKEGRTESPLVLA-VRDYRSRLGMCRQSEIREQLIRDGVCTRDNAPSRSSINHILR 218
Query: 138 NKL 140
KL
Sbjct: 219 TKL 221
>Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical
protein Y53C12C.1 protein.
Length = 314
Score = 68.1 bits (159), Expect = 4e-12
Identities = 32/58 (55%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
Query: 82 GSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNK 139
G+KP+V TP+VV+ I+Q K +P IFAWEIR++L+++ VC PSVSSI+RILR +
Sbjct: 48 GTKPKVATPQVVAKIEQYKRDNPTIFAWEIREKLISEDVCT--TPPSVSSINRILRTR 103
>Z54235-5|CAA90976.2| 202|Caenorhabditis elegans Hypothetical
protein C09G9.7 protein.
Length = 202
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 18 NQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILP 77
N+ G +++GRPL R +IVE + G++ I++QL ++H CVSK+L RY ETG I+
Sbjct: 80 NRYGRPYISGRPLLTCDRQKIVECYKKGMKKIHIAKQLGITHSCVSKVLRRYAETGEIVA 139
Query: 78 GA 79
A
Sbjct: 140 KA 141
>Z73105-3|CAA97441.2| 205|Caenorhabditis elegans Hypothetical
protein R13.2 protein.
Length = 205
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 18 NQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILP 77
N G + GRPL R RI++L G++ IS+ L +SHGCVSKI++R+ TG +LP
Sbjct: 83 NLYGRPYCPGRPLSMEERTRIIQLHNNGMKVNAISKSLCISHGCVSKIISRFRATGVLLP 142
>U23518-3|AAC70885.1| 109|Caenorhabditis elegans Hypothetical
protein F21D12.5 protein.
Length = 109
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 16 EVNQLGGVFVNGRPLPNAVRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSI 75
+V +G + GRPL R +IV L + G R I+R + V+H CVSKI++RY TGS+
Sbjct: 10 KVKAVGRSYNPGRPLCLEDRKKIVRLYEEGCRVSHIARLIGVTHSCVSKIMSRYRRTGSV 69
Query: 76 LP 77
P
Sbjct: 70 QP 71
>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
protein AC3.5 protein.
Length = 1090
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 50 DISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAW 109
DI++QL SHG +S+ R + A G+ P T V SY+ A P + A
Sbjct: 749 DIAKQLEKSHGKLSE-RTRARLISDVFALANSGALPFETALNVTSYLPMETATVPWLIAT 807
Query: 110 EIRDRL 115
I +L
Sbjct: 808 RIFKKL 813
>Z81531-7|CAB04320.1| 722|Caenorhabditis elegans Hypothetical
protein F36D3.8 protein.
Length = 722
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 78 GAIGGSKPRVTTPKVVSYIKQLKAKDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRI 135
G I PRV S +K +KA I +E+R + C +Y +P +++
Sbjct: 264 GPIYADNPRVAQAMFASILKDIKASATEIDHYEVRSSQQSQD-CFRYEIPDGVDFAKV 320
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 40 ELAQLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVV 93
E LG R C R + S + K +AR HET G G K + K+V
Sbjct: 314 ENIDLGSRKCPFCRHVSKSPAMLEKHIAR-HETDGTSGGTPGALKRAQSKKKIV 366
>U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 13 protein.
Length = 151
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 34 VRLRIVELAQLGIRPCDISRQLRVSHG 60
V+ +IV++A+ G+RP I LR SHG
Sbjct: 33 VQDQIVKMAKKGLRPSQIGVILRDSHG 59
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.142 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,933,987
Number of Sequences: 27539
Number of extensions: 140407
Number of successful extensions: 275
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 17
length of query: 199
length of database: 12,573,161
effective HSP length: 78
effective length of query: 121
effective length of database: 10,425,119
effective search space: 1261439399
effective search space used: 1261439399
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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