GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000787-TA|BGIBMGA000787-PA|IPR001523|Paired box protein,
N-terminal, IPR009057|Homeodomain-like
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.9  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 71  ETGSILPGAIG------GSKPRVTTPKVVSYIKQLKAKD 103
           E   ILP A+         K + T  KVV+Y+K  + KD
Sbjct: 59  ELKKILPDALSTGCNKCNEKQKHTANKVVNYLKTKRPKD 97


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 71  ETGSILPGAIG------GSKPRVTTPKVVSYIKQLKAKD 103
           E   ILP A+         K + T  KVV+Y+K  + KD
Sbjct: 59  ELKKILPDALSTGCNKCNEKQKHTANKVVNYLKTKRPKD 97


>AF388659-1|AAK71995.1|  782|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform A
          protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 56 RVSHGCVSKILARYHETGSILPG 78
          R+S GCVS+I  R      +L G
Sbjct: 27 RISAGCVSRISNRISRNRVLLRG 49


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 62  VSKILARYHETGSILPGAIG 81
           +SK+ + YHE    L  A+G
Sbjct: 480 LSKVTSNYHEEFQSLNNAVG 499


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.142    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,808
Number of Sequences: 429
Number of extensions: 1663
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)