Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000786-TA|BGIBMGA000786-PA|IPR005225|Small GTP-binding
protein domain, IPR006689|ARF/SAR superfamily,
IPR006688|ADP-ribosylation factor, IPR006687|GTP-binding protein SAR1,
IPR003579|Ras small GTPase, Rab type
(184 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 3e-25
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 109 1e-24
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 108 3e-24
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 106 9e-24
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 5e-22
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 89 2e-18
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 82 3e-16
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 66 2e-11
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44) 64 7e-11
SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 8e-10
SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 8e-10
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36) 59 2e-09
SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 57 8e-09
SB_15207| Best HMM Match : Arf (HMM E-Value=1.9e-05) 52 4e-07
SB_27557| Best HMM Match : Ras (HMM E-Value=0) 46 1e-05
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_214| Best HMM Match : Arf (HMM E-Value=0) 40 0.002
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 38 0.004
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 37 0.009
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 36 0.026
SB_36483| Best HMM Match : Ras (HMM E-Value=0) 35 0.035
SB_16166| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_7589| Best HMM Match : Ras (HMM E-Value=0) 35 0.046
SB_44625| Best HMM Match : Ras (HMM E-Value=0) 34 0.061
SB_10811| Best HMM Match : Ras (HMM E-Value=0) 33 0.11
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 33 0.14
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21) 31 0.43
SB_54971| Best HMM Match : Ras (HMM E-Value=0) 31 0.75
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.99
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 29 3.0
SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_38597| Best HMM Match : Arf (HMM E-Value=0.15) 29 3.0
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0) 29 3.0
SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34) 28 4.0
SB_39864| Best HMM Match : Ras (HMM E-Value=1.6e-30) 28 5.3
SB_10963| Best HMM Match : DED (HMM E-Value=7.1e-12) 28 5.3
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_7588| Best HMM Match : DcpS (HMM E-Value=0) 27 7.0
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27) 27 9.3
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 27 9.3
SB_4913| Best HMM Match : CBF (HMM E-Value=2.9) 27 9.3
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 111 bits (267), Expect = 3e-25
Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 23 GLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYF 81
GLD AGKTTIL + GE + TI PT+GFN++++E+K +WDVGGQ +R W++YF
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTI-PTIGFNVESVEYKNISFTVWDVGGQDKIRPLWRHYF 82
Query: 82 ESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREA 141
++T R++ NK DLP ALS+ +I E
Sbjct: 83 QNTQGLIYVVDSNDRERVNESKEELNKMLQEDELKDAVVLVMANKQDLPNALSVSEITEK 142
Query: 142 LDLDSIKSHHWRIVRCSAVTGENLLEGIDWMLDDIA 177
L L SI+ W I A G L EG+DW+ ++++
Sbjct: 143 LGLQSIRDRQWYIQAACATQGTGLYEGLDWLSNELS 178
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 109 bits (263), Expect = 1e-24
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 23 GLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYF 81
GLD AGKTTIL + GE + TI PT+GFN++T+E+K +WDVGGQ +R W++YF
Sbjct: 24 GLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82
Query: 82 ESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREA 141
++T R+ NK DLP A++ +I +
Sbjct: 83 QNTQGLIFVVDSNDRERVGEAREELNRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 142
Query: 142 LDLDSIKSHHWRIVRCSAVTGENLLEGIDWMLDDIASR 179
L L S+++ W I A +G+ L EG+DW+ + + S+
Sbjct: 143 LGLHSLRNRQWYIQATCATSGDGLYEGLDWLSNTLKSK 180
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 108 bits (259), Expect = 3e-24
Identities = 52/154 (33%), Positives = 73/154 (47%)
Query: 23 GLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFE 82
GLDNAGKTTIL R E + + PTLGFN++T+ +K +WD+GGQ +R+ W+ Y++
Sbjct: 3 GLDNAGKTTILYRLKLEEVVSTVPTLGFNVETVTYKNISFTVWDIGGQDKIRALWRVYYQ 62
Query: 83 STXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREAL 142
R NK D+ A++ +IRE L
Sbjct: 63 GCQGIIFVVDSADRERAEEARNELHKLLAEEELQQVILLVIANKQDMANAMTASEIREKL 122
Query: 143 DLDSIKSHHWRIVRCSAVTGENLLEGIDWMLDDI 176
L+ I+ W + AV GE L EG+DWM I
Sbjct: 123 KLNEIRGRPWFVQSACAVKGEGLFEGLDWMATQI 156
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 106 bits (255), Expect = 9e-24
Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 23 GLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYF 81
GLD AGKTTIL EP++TI PT+GFN++ +E+K K +WD+GGQ +R W+ YF
Sbjct: 97 GLDAAGKTTILYHLKLDEPVNTI-PTIGFNVEVVEYKNIKFTVWDIGGQDKIRLLWRLYF 155
Query: 82 ESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREA 141
+ T R+ NK DLP ++S ++ E
Sbjct: 156 QETQGLIFVVDSNDRDRIQEAKEELFKLLKEEELKRAALLVLANKQDLPDSMSTTELSEK 215
Query: 142 LDLDSIKSHHWRIVRCSAVTGENLLEGIDWMLDDIASR 179
L L +++S +W I A+ G+ + EG++W+ I R
Sbjct: 216 LSLHTLRSRNWYIQATCALKGQGVYEGLEWLAQQIQLR 253
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 101 bits (241), Expect = 5e-22
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 18/148 (12%)
Query: 19 IKVRGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKG-FKLNIWDVGGQKSLRSYW 77
I + GLDN+GKTTILK E + I+PT GFNIK+++ KG F+LN+WD+GGQ+ +R YW
Sbjct: 20 ILLLGLDNSGKTTILKSLASEDVLHITPTQGFNIKSVQSKGGFRLNVWDIGGQRKIRPYW 79
Query: 78 KNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQ 137
KNYFE+T + NK DL A + +
Sbjct: 80 KNYFENTDILELDELLEEEKLIGV-----------------PLLVFANKQDLMNAATPAE 122
Query: 138 IREALDLDSIKSHHWRIVRCSAVTGENL 165
I L L++I+S W+I CSA+TGE +
Sbjct: 123 ISSNLGLNTIRSRGWQIQGCSALTGEGV 150
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 89.4 bits (212), Expect = 2e-18
Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 17 ISIKVRGLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLE-HKGFKLNIWDVGGQKSLR 74
+ I + GLD AGKTTIL + E + TI PT+GFN++TL+ K L IWDVGGQ +R
Sbjct: 20 VRIVMLGLDAAGKTTILYKLKLKETVSTI-PTIGFNVETLQPTKNVTLTIWDVGGQDKIR 78
Query: 75 SYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALS 134
W++YF+ T R+ NK DLP AL
Sbjct: 79 PLWRHYFQGTEGLLFVVDSSDVLRMPEAKEELHGVLDSDEFRDVPVVVVANKQDLPNALK 138
Query: 135 LQQIREALDLDSIKSHHWRIVRCSAVTGENLLEGIDWML 173
++ + L L K + W + A G+ L E +D M+
Sbjct: 139 AGEMAKHLGLLQHKRNPWHVQEACATNGDGLYEAMDHMV 177
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 81.8 bits (193), Expect = 3e-16
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 23 GLDNAGKTTILKRFN-GEPIDTISPTLGFNIKTLE-HKGFKLNIWDVGGQKSLRSYWKNY 80
GLD +GKT+IL R E ++T+ PT FN++T+ KG + +WD+GG++ R WK Y
Sbjct: 28 GLDKSGKTSILYRNKFREYVNTV-PTTAFNVETIRPFKGIRFKVWDIGGREQNRPLWKAY 86
Query: 81 FESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIRE 140
T +L NK D P A+ ++I
Sbjct: 87 ARQTDAVIYVVDSTSAGKLEEARDELFNLLNSAQLNGAPILIFANKQDCPNAIPPREITH 146
Query: 141 ALDLDSIKSHH-WRIVRCSAVTGENLLEGI 169
L L + + H W + CSA+ GE LL+G+
Sbjct: 147 MLSLHDLNARHLWFVQPCSALLGEGLLDGL 176
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 29 KTTILKRFN-GEPIDTISPTLGFNIKTLEH-KGFKLNIWDVGGQKSLRSYWKNYFESTXX 86
KTTIL + E ++T+ PT+ FN++T+ K ++WD+GGQ +R W++YF+
Sbjct: 122 KTTILYKLKLKETVNTV-PTVAFNVETISPCKNITFSVWDIGGQDKIRRLWRHYFQGAEG 180
Query: 87 XXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREALDLDS 146
R+ NK DL GA+ ++ E L L
Sbjct: 181 IIFVVDSADKERIFEVREELTRVLQHSELNGVPVVVVANKQDLLGAIGPDKMAEELSLYK 240
Query: 147 IKSHHWRIVRCSAVTGENLLEGID 170
+ WRI A G+ L E ++
Sbjct: 241 HTKNPWRIQGTCATAGDGLYEAME 264
>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
Length = 257
Score = 64.1 bits (149), Expect = 7e-11
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 5/170 (2%)
Query: 5 IFFSM-GTMVPVSISIKVRGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKGFKLN 63
+F S+ G MV +S+S K+ + +GK I+ I ++S L I ++ K ++
Sbjct: 90 VFMSVSGKMVIMSVSGKLVIMSVSGKLVIMSVSGKLVIMSVSGKLV--IMSVSGKLVIMS 147
Query: 64 IWD--VGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXX 121
I + + GQ S+R YW+ Y+ +T R+
Sbjct: 148 ILNSLIPGQTSIRPYWRCYYANTDAVIYVVDSVDKDRIGISKQELLAMLEEDELKKAILI 207
Query: 122 XXXNKCDLPGALSLQQIREALDLDSIKSHHWRIVRCSAVTGENLLEGIDW 171
NK D+ GA+S ++ AL L ++KS W I + SAV GE L E ++W
Sbjct: 208 VFANKQDMEGAMSSSEVSNALGLSALKSRTWAIFKTSAVKGEGLDEAMEW 257
>SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 60.5 bits (140), Expect = 8e-10
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 4/141 (2%)
Query: 8 SMGTMVPVSISIKVRGLDNAGKTTILKRFN---GEPIDTISPTLGFNIKTLEHKGFKLNI 64
S G VP I V GLD +GK+ L + + + T GFN+ L G LNI
Sbjct: 159 SAGNSVPEK-RILVLGLDGSGKSVFLSALSQGDSSKRPSTTKTEGFNVVCLTTDGLNLNI 217
Query: 65 WDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXX 124
W++GG + R+YW N+ T R +
Sbjct: 218 WEIGGDEKYRAYWPNFIADTQLLVYVVDSSDPDRFNESRDNLKSLLSNSLLNGVPVLLVA 277
Query: 125 NKCDLPGALSLQQIREALDLD 145
+K DLPGA L +I L ++
Sbjct: 278 SKQDLPGARQLSEIVSVLGIN 298
>SB_6793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 60.5 bits (140), Expect = 8e-10
Identities = 26/43 (60%), Positives = 29/43 (67%)
Query: 60 FKLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSAC 102
FKLNIWDVGGQ+SLRSYW+NYFEST RL+ C
Sbjct: 2 FKLNIWDVGGQRSLRSYWRNYFESTDGLIWVVDSADQRRLADC 44
>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
Length = 260
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 23 GLDNAGKTTILKRF-NGEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYF 81
GL +GKTT + +G+ + + PT+GFN++ + + +WD+GGQ RS W+ Y
Sbjct: 27 GLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVSKGNVTIKVWDIGGQPRFRSMWERYC 86
Query: 82 ESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREA 141
+L A NK DLP +L +++ E
Sbjct: 87 RGVNCIVYMVDAADHDKLEASKNELHNLLEKPQLAGIPILVLGNKKDLPNSLDEKELVER 146
Query: 142 LDLDSIK 148
L+L S++
Sbjct: 147 LNLTSVQ 153
>SB_31701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 19 IKVRGLDNAGKTTIL--------KRFNGEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQ 70
I + GLDNAGKTT+L K +NG P + I+ T+G NI + KL WD+GGQ
Sbjct: 24 ILILGLDNAGKTTLLEQIKRKFCKTYNGIPFEKITTTVGLNIGKITISHVKLMFWDLGGQ 83
Query: 71 KSLRSYW 77
+ LR+ W
Sbjct: 84 QELRTLW 90
>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
Length = 650
Score = 57.2 bits (132), Expect = 8e-09
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 44 ISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFEST 84
+SP GFN++T+E+K +WDVGGQ +R W++YF++T
Sbjct: 494 VSPVQGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT 534
>SB_15207| Best HMM Match : Arf (HMM E-Value=1.9e-05)
Length = 259
Score = 51.6 bits (118), Expect = 4e-07
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 49 GFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFEST 84
GFN++T+EH+ K IWDVGG + LR W++Y+ +T
Sbjct: 222 GFNVETVEHRSLKFTIWDVGGLQKLRPLWRHYYLNT 257
>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
Length = 184
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 23 GLDNAGKTTILKRFN-GEPIDTISPTLG--FNIKTLEHKG---FKLNIWDVGGQKSLRSY 76
G GK+++L++F G+ + PT+G F+++ LE KG KL IWD GQ+ RS
Sbjct: 20 GDSTVGKSSLLRQFTEGQFFENSDPTVGVDFHVRVLELKGDVRIKLQIWDTAGQERFRSI 79
Query: 77 WKNYFEST 84
+Y+ +T
Sbjct: 80 TYSYYRNT 87
>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 13 VPVSISIKVRGLDNAGKTTILKRFNGEPIDT-ISPTLG--FNIKTLEHKG--FKLNIWDV 67
V ++ I + G GK+++L RF + D I T+G F +KTL +G KL IWD
Sbjct: 5 VLTTLKILIVGESGVGKSSLLLRFTDDTFDPDIGATIGVDFKVKTLTVEGNKAKLAIWDT 64
Query: 68 GGQKSLRSYWKNYF 81
GQ+ R+ +Y+
Sbjct: 65 AGQERFRTLTPSYY 78
>SB_24842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 26 NAGKTTILKRFN-GEPIDTISPTLG--FNIKTLEHKG--FKLNIWDVGGQKSLRSYWKNY 80
N GKT ++++F G PT+G F IKT++ G KL IWD GQ+ RS ++Y
Sbjct: 17 NVGKTCLVRQFTKGYFPPNQGPTIGVDFTIKTVDVDGEKVKLQIWDTAGQERFRSITQSY 76
Query: 81 FES 83
+ +
Sbjct: 77 YHN 79
>SB_214| Best HMM Match : Arf (HMM E-Value=0)
Length = 148
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/99 (24%), Positives = 35/99 (35%)
Query: 46 PTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFESTXXXXXXXXXXXXXRLSACXXX 105
PTL + L G + +D+GG + R WK+YF + RL+
Sbjct: 6 PTLHPTSEELSMGGMRFTTFDLGGHRQARRIWKDYFPAVNGIVFIIDCADFERLAESKKE 65
Query: 106 XXXXXXXXXXXXXXXXXXXNKCDLPGALSLQQIREALDL 144
NK D+PGA+ IR+ L
Sbjct: 66 LDSLLADEQLSSCPVLILGNKIDIPGAVGEDYIRQNFGL 104
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 16 SISIKVRGLDNAGKTTILKRFN-GEPIDTISPTLGFNIKT--LEHKG--FKLNIWDVGGQ 70
S + V G GKT++++RF G D S T+G ++ T L+ G KL WD GQ
Sbjct: 11 SFKVLVVGDPGVGKTSLIRRFTKGYFCDNSSSTVGVDVGTRVLDIHGDRVKLQCWDTAGQ 70
Query: 71 KSLRSYWKNYFES 83
+ R ++Y+ +
Sbjct: 71 EKFRGITQSYYRN 83
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 23 GLDNAGKTTILKRFNGEPI-DTISPTLG--FNIKTL--EHKGFKLNIWDVGGQKSLRSYW 77
G GK+++L RF + +T T+G F I+TL + K KL IWD GQ+ R+
Sbjct: 15 GDSGVGKSSLLLRFADDTFSNTYISTIGVDFKIRTLTVDGKTIKLQIWDTAGQERFRTLT 74
Query: 78 KNYFES 83
Y+ S
Sbjct: 75 TAYYRS 80
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 23 GLDNAGKTTILKRF---NGEPIDTISPTLGFNIKTLEHKG--FKLNIWDVGGQKSLRSYW 77
G GK++ L RF +P T + + F IKT+ G + +WD GQ+ RS
Sbjct: 903 GDSGVGKSSFLHRFCHDQWKPSFTATIGVDFQIKTMNVNGQCIAIQLWDTAGQERFRSIT 962
Query: 78 KNYF 81
K YF
Sbjct: 963 KQYF 966
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 35.5 bits (78), Expect = 0.026
Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 6/123 (4%)
Query: 58 KGFKLNIWDVGGQKSLRSYWKNYF-ESTXXXXXXXXXXXXXRLSACXXXXXXXXXXXXXX 116
K +WD+GGQ +LR K+YF + RL+
Sbjct: 16 KNVHFAVWDIGGQPNLR---KHYFTDDKSGLIYVVDSTDIQRLNEAQLLGILQEKVMVDV 72
Query: 117 XXXXXXXXNKCDLPGALSLQQIREALDLDSIKSHHWRIVRCSAVTGENLLEGIDWMLDDI 176
NK DLP L I E L L +K + + A G+ L E W+ +
Sbjct: 73 PVVVVA--NKQDLPNVLKAGDIAEHLGLLKLKRNPLHVQEAFASNGDGLCEAHKWLPNSR 130
Query: 177 ASR 179
SR
Sbjct: 131 VSR 133
>SB_36483| Best HMM Match : Ras (HMM E-Value=0)
Length = 213
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 19 IKVRGLDNAGKTTILKRFNGEPIDT-ISPTLGFNIKT----LEHKGFKLNIWDVGGQKSL 73
+ V G N GK+++++RF+ + + + T+G + L+ K KL +WD G++
Sbjct: 13 VLVLGDCNVGKSSLIRRFHDDEFNAQLCTTIGVDFFIHDFDLDGKKVKLQLWDTAGEEKY 72
Query: 74 RSYWKNYF 81
R+ +++F
Sbjct: 73 RALSRSFF 80
>SB_16166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 34.7 bits (76), Expect = 0.046
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 125 NKCDLPGALSLQQIREALDLDSIKSHHWRIVR 156
NK D+ G++S+ +I E L+L IK H W I R
Sbjct: 58 NKQDIKGSMSVAEISEQLNLACIKDHGWHIQR 89
>SB_7589| Best HMM Match : Ras (HMM E-Value=0)
Length = 640
Score = 34.7 bits (76), Expect = 0.046
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 28 GKTT-ILKRFNGEPIDTISPTLG--FNIKTL--EHKGFKLNIWDVGGQKSLRSYWKNYF 81
GK++ IL+ ++ TLG F +KTL + K + L +WD GQ+ RS K+YF
Sbjct: 454 GKSSFILRLCRNRFHSALNSTLGVDFQMKTLVVDGKTYALQLWDTAGQERFRSIAKSYF 512
>SB_44625| Best HMM Match : Ras (HMM E-Value=0)
Length = 128
Score = 34.3 bits (75), Expect = 0.061
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 36 FNGEPIDTISPTLGFNIKTLEHKG--FKLNIWDVGGQKSLRSYWKNYFEST 84
F+G I TI + F I+T+ G KL IWD GQ+ R+ Y+ T
Sbjct: 2 FSGSYITTIG--VDFKIRTINIDGEKVKLQIWDTAGQERFRTITSTYYRGT 50
>SB_10811| Best HMM Match : Ras (HMM E-Value=0)
Length = 304
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 43 TISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYF 81
TI G I + K KL IWD GQ+ RS ++Y+
Sbjct: 127 TIGVEFGSKIVNVGGKSVKLQIWDTAGQERFRSVTRSYY 165
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 23 GLDNAGKTTILKRFNGEPIDTISP-TLGFNIKT----LEHKGFKLNIWDVGGQKSLRSYW 77
G GK+++L RF D S T+G T +E K K +WD GQ+ R+
Sbjct: 19 GDSGVGKSSLLSRFTRNEFDIESKSTIGVEFATRSIQVEGKIIKAQVWDTAGQERYRAIT 78
Query: 78 KNYF 81
Y+
Sbjct: 79 SAYY 82
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 50 FNIKTLEHKG--FKLNIWDVGGQKSLRSYWKNYF 81
F I+T+E G KL IWD GQ+ R+ +Y+
Sbjct: 66 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 99
>SB_33745| Best HMM Match : Ras (HMM E-Value=2.5e-21)
Length = 115
Score = 31.5 bits (68), Expect = 0.43
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 23 GLDNAGKTTILKRFNGEPIDT-ISPTLG--FNIKTL--EHKGFKLNIWDVGGQKSLRSYW 77
G GKT+ L R+ + + T+G F +KT+ K KL IWD GQ+ R+
Sbjct: 28 GNSAVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 87
Query: 78 KNYF 81
Y+
Sbjct: 88 TAYY 91
>SB_54971| Best HMM Match : Ras (HMM E-Value=0)
Length = 239
Score = 30.7 bits (66), Expect = 0.75
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 15 VSISIKVRGLDNAGKTTILKR-FNGEPIDTISPTLGFNIKTL---EHKG-FKLNIWDVGG 69
+ +S G GKTT +KR GE TLG + L +G K N+WD G
Sbjct: 31 IVVSFLQVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLIFFTSRGPIKFNVWDTAG 90
Query: 70 QKSLRSYWKNYF 81
Q+ Y+
Sbjct: 91 QEKFGGLRDGYY 102
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 30.3 bits (65), Expect = 0.99
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 16 SISIKVRGLDNAGKTTILKRF-NGEPIDTISPTLGFNI--KTLEHKG--FKLNIWDVGGQ 70
+ I + G N GKT + R G+ + T+G + K+LE G KL +WD GQ
Sbjct: 46 TFKIIIIGDSNVGKTCLAYRLCTGKFPERTETTIGVDFWEKSLELNGEFVKLQLWDTAGQ 105
Query: 71 KSLR 74
+ R
Sbjct: 106 ERFR 109
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 28.7 bits (61), Expect = 3.0
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 8 SMGTMVPVSISIKVRGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLE-HKG-----FK 61
S +P SI + G D +GKTT++ + G+ D IS G LE H +
Sbjct: 854 SASRKLPSHKSIILIGNDESGKTTLISKLRGKE-DDISKGHGLEYTYLEVHDEEIDDYTR 912
Query: 62 LNIWDVGG---QKSLRSY 76
LN+W + G KSL Y
Sbjct: 913 LNVWILDGDPRNKSLLKY 930
>SB_22528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 30 TTILKRFNGEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQK 71
T F GE I T+ NI L+ K + + +WD GQ+
Sbjct: 24 TATTNAFPGEYIPTVFDNYSSNIM-LDGKAYNVGLWDTAGQE 64
>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 47 TLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFE 82
T G ++K ++DVGGQ+S R W + FE
Sbjct: 230 TTGIVEVQFDYKRLHFKLFDVGGQRSERKKWIHCFE 265
>SB_38597| Best HMM Match : Arf (HMM E-Value=0.15)
Length = 188
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 60 FKLNIWDVGGQKSLRSYWKNYF 81
F + ++D+GG +R WK+Y+
Sbjct: 4 FNVTVYDLGGGAKIRGIWKDYY 25
>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
Length = 315
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 47 TLGFNIKTLEHKGFKLNIWDVGGQKSLRSYWKNYFE 82
T G ++K ++DVGGQ+S R W + FE
Sbjct: 182 TTGIVEVQFDYKRLHFKLFDVGGQRSERKKWIHCFE 217
>SB_3743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 23 GLDNAGKTTILKRFNGEPIDT-ISPTLGFNIKT----LEHKGFKLNIWDVGGQKSLRSYW 77
G GK+++ RF + + PT+G + T L+ +L IWD GQ+ R
Sbjct: 170 GDQGVGKSSLAGRFIYDIFEEKYQPTIGIDFMTKTVLLDDFEVRLQIWDTAGQERFRCLI 229
Query: 78 KNYFEST 84
+Y +
Sbjct: 230 HSYIRDS 236
>SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 28 GKTTILKRFNGEPIDTIS-PTLGFNIKT----LEHKGFKLNIWDVGGQKSLRS 75
GK++++ RF DT S T+G L+ + + L IWD GQ+ +S
Sbjct: 223 GKSSLMNRFVCGKFDTQSFHTIGVEFLNKDVKLDGESYTLQIWDTAGQERFKS 275
>SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34)
Length = 241
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 61 KLNIWDVGGQKSLRSYWKNYFES 83
KL IWD GQ+ R+ ++Y+ S
Sbjct: 96 KLQIWDTAGQERFRTITQSYYRS 118
>SB_39864| Best HMM Match : Ras (HMM E-Value=1.6e-30)
Length = 421
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 58 KGFKLNIWDVGGQKSLRSYWKNYF 81
K +K NIWD GQ+ +S Y+
Sbjct: 7 KAYKFNIWDTAGQERFKSLAPLYY 30
>SB_10963| Best HMM Match : DED (HMM E-Value=7.1e-12)
Length = 349
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 15 VSISIKVRGLDNAGKTTILKRFNGEP------IDTISPTLGFNIKTLEHKGFKLNIWDVG 68
V + + RG G IL R+ +P + T+ G +KTL KG ++
Sbjct: 132 VVLELAGRGAWYLGCGYILNRYKDDPDTLAHLVTTVVLPTGILMKTLS-KGSITIVFQAN 190
Query: 69 GQKSLRSYWKNYFEST 84
+LR +WK Y + T
Sbjct: 191 DLDALREFWKRYRDGT 206
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 16 SISIKVRGLDNAGKTTILKRFNGEPIDTI-SPTLGFNI------KTLEHKGFKLNIWDVG 68
S+ + + G + GKTT++ R + I S T G ++ K H+ F IWD G
Sbjct: 551 SMKLMLVGREAQGKTTLMHRLMLDNTYFINSATNGISMEEFRLKKDFLHREFIFKIWDFG 610
Query: 69 GQK 71
GQ+
Sbjct: 611 GQE 613
>SB_34767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 28 GKTTILKRF-NGEPIDTISPTLG--FNIKTLE---HKGFKLNIWDVGGQKSLRSYWKNYF 81
GK + +KR+ N PT+G F +KT++ + +L IW + GQ+ S + Y+
Sbjct: 30 GKQSFVKRYVNNIWHPLYKPTIGVDFALKTIQWAQNTTIRLQIWLIAGQERFSSMTRVYY 89
Query: 82 E 82
+
Sbjct: 90 K 90
>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
Length = 446
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 66 DVGGQKSLRSYWKNYF 81
DVGGQ +R W++YF
Sbjct: 143 DVGGQDKIRPLWRHYF 158
>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
Length = 517
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 66 DVGGQKSLRSYWKNYFES 83
++ G+K R+YWK YF S
Sbjct: 10 NLSGRKITRTYWKRYFRS 27
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 17 ISIKVRGLDNAGKTTILKRFNGEPIDTISPTLG 49
+ + V G+ GKTT+L G+P+ + T+G
Sbjct: 667 MKLMVVGIQGYGKTTLLAALKGQPLPSNLSTVG 699
>SB_4913| Best HMM Match : CBF (HMM E-Value=2.9)
Length = 328
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 126 KCDLPGALSLQQIREALDLDSIKSHHWRIVRCSAVTGENLLEGI-DWMLDDIASRIFT 182
KCD PGAL + + E D+ + + S + LL+ D+ D++ S +F+
Sbjct: 122 KCDTPGALEVDEQDEKDDVKEEEEDEQKQKLMSTDLDDELLKAAEDFFDDELVSAVFS 179
>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 16 SISIKVRGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHKGFKLNIWDVGGQKSLRS 75
S S + LD G + + + T T G K ++DVGGQ+S R
Sbjct: 151 SASYYLNALDRLGSPDYVPT-EQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERK 209
Query: 76 YWKNYFE 82
W + FE
Sbjct: 210 KWIHCFE 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.138 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,652,341
Number of Sequences: 59808
Number of extensions: 137185
Number of successful extensions: 425
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 53
length of query: 184
length of database: 16,821,457
effective HSP length: 78
effective length of query: 106
effective length of database: 12,156,433
effective search space: 1288581898
effective search space used: 1288581898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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