GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000786-TA|BGIBMGA000786-PA|IPR005225|Small GTP-binding
protein domain, IPR006689|ARF/SAR superfamily,
IPR006688|ADP-ribosylation factor, IPR006687|GTP-binding protein SAR1,
IPR003579|Ras small GTPase, Rab type
         (184 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.44 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 47  TLGFNIKTLEHKGFKLNIWDVGGQKSLRSY 76
           T+G    T++   + LNI+D+   K LR Y
Sbjct: 148 TIGIGNTTIQACPYTLNIFDLTSDKLLRQY 177


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 164 NLLEGIDWMLDDIASRIFTL 183
           +LL  +DWMLD I + I  L
Sbjct: 464 SLLFAVDWMLDRIRTSINVL 483


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 21  VRGLDNAGKTTILKRFNGEPIDT 43
           +R L N G+ TI+  +N E + T
Sbjct: 404 LRELRNLGRKTIMVNYNPETVST 426


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,204
Number of Sequences: 429
Number of extensions: 1125
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 184
length of database: 140,377
effective HSP length: 54
effective length of query: 130
effective length of database: 117,211
effective search space: 15237430
effective search space used: 15237430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)