Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000785-TA|BGIBMGA000785-PA|undefined
         (177 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   30   1.2  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                30   1.2  
SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   3.7  
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_26222| Best HMM Match : Pneumo_NS1 (HMM E-Value=4.2)                27   6.5  
SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               27   6.5  
SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)                 27   8.7  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_24096| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_54074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 13  AHIYKFRTITFGPSVYRAI-SSARWK--IFPSSLRLPKL--RIKNSGYHKPRILADKSTS 67
           AH+Y    ++    V R I SS R+   IF  +LR  ++  R++ +  + P+   D+ST+
Sbjct: 849 AHLYTCGDVSMAADVCRTIQSSGRYHEDIFGVTLRTREVTNRVRTAARNSPKYPLDRSTT 908

Query: 68  LTV 70
           LTV
Sbjct: 909 LTV 911


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 20 TITFGPSVYRAISSARWKIFPSSLRLPKLRIKNSGYHKPRILA 62
          T+TFGP   RA+SS      P     PK ++    Y K  +LA
Sbjct: 4  TLTFGPEWLRALSSGNSVTSPPPSPGPKFKLAEFRYGKEEMLA 46


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 46  PKLRIKNSGYHKPRILADKSTSLTVVPQQ-ASIAASTGPSQPTHRASWSYGTQLHCLITP 104
           PKL    +  H P++LA  ++   V P+  A I +ST  +  TH  +    T  H L TP
Sbjct: 695 PKLLALTTSLH-PKLLAHITS---VHPKLLAPITSSTPQTTSTHHITTPQTTCTHHLTTP 750

Query: 105 QQFIAAHDRI--INAWGHTSPAWQLCTHELLATRTQHPSSVST 145
           +     H       +  H +     CTH L    T     +ST
Sbjct: 751 ETTSTHHISAPQTTSTHHITTPQTTCTHHLTTPETTCTHHIST 793


>SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 29 RAISSARWKIFPSSLRLPKLRIKNSGYHKPRILADKSTSL---TVVPQQASIAASTG 82
          RA + + W++ PS L  P   +  +  HK ++   KS +L    ++ + AS+  S G
Sbjct: 37 RAAARSSWRVTPSGLIRPVHAMNGTTSHKKKLATGKSENLLNPKMLVEAASLLGSVG 93


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 72  PQQASIAASTGPSQPTH 88
           PQ AS+  S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564


>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 1/16 (6%)

Query: 119 GHTSPAWQLCTH-ELL 133
           GHT P W LC H ELL
Sbjct: 458 GHTGPVWALCVHGELL 473


>SB_26222| Best HMM Match : Pneumo_NS1 (HMM E-Value=4.2)
          Length = 350

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 38 IFPSSLRLPKLRIKNSGYHKPRIL---ADKSTSLT-VVPQQASIAASTGPSQPTHRA 90
          + P S+ +   R+ NSG  +PR++   A K  S+T  +   AS +++    QPT RA
Sbjct: 1  MLPISVFVYSRRLVNSGNEEPRVITNSAKKRQSVTNDIQMVASESSTLNDQQPTARA 57


>SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 81  TGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINA 117
           TG S P+   +  Y TQ+  L T  Q + AH    NA
Sbjct: 62  TGSSTPSVSGNTDYSTQIKNLTTELQHLGAHMNFHNA 98


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 1    MPESRLRHFQDKAHIYKFRTITFGPSVYRAI 31
            MPES + HF +  H + F+ +    S + AI
Sbjct: 1893 MPESGIHHFAETGHKFHFQELQISGSAHVAI 1923


>SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)
          Length = 911

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 116 NAWG-HTSPAWQLCTHELLATRTQHPSSV---STHRRFRAALATRT 157
           +A+G HT P  QLC    L  R +  SSV    T RR  AA  TRT
Sbjct: 667 HAFGTHTCPGEQLCLVGQLGHRARWSSSVIGLYTRRRELAAAFTRT 712


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 116 NAWG-HTSPAWQLCTHELLATRTQHPSSV---STHRRFRAALATRT 157
           +A+G HTSP  QLC    L  R +  SSV     H R  AA  TRT
Sbjct: 305 HAFGTHTSPGKQLCLVGQLGYRGRWSSSVIDRPLHTRELAAAFTRT 350


>SB_24096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 17  KFRTITFGPSVYRAISSARWKIFPSSLRLPKLR 49
           +FR   F  S++R IS++ W +   S+R+P+ R
Sbjct: 220 QFRQFYF--SLFRRISNSFWNVLVYSIRMPEFR 250


>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 92  WSYGTQLHCLITPQQFIAAHDRI 114
           WSYG  L C   P Q + + +R+
Sbjct: 76  WSYGVLLDCKTFPSQHLTSEERV 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,582,492
Number of Sequences: 59808
Number of extensions: 218773
Number of successful extensions: 497
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 15
length of query: 177
length of database: 16,821,457
effective HSP length: 78
effective length of query: 99
effective length of database: 12,156,433
effective search space: 1203486867
effective search space used: 1203486867
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)