Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000785-TA|BGIBMGA000785-PA|undefined
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    28   0.045
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 0.045
 Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 6   LRHFQDKAHIYKFRTITFGPSVYRAIS-SARWKIFPSSLRLPKLRIKNSGYHKPRILADK 64
           L H      +Y+ +T+ +   ++  I+    ++++P  +++  + I++  YHK ++    
Sbjct: 89  LNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQICPIYIESFSYHKQKLRLRW 148

Query: 65  ST-SLTVVPQ 73
            T ++TV P+
Sbjct: 149 GTGAVTVNPE 158


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 46  PKLRIKNSGYHKPRILADKSTSLTVVPQQASIAASTGPSQ 85
           P +   +S    PRI +  S+S +  P     AA+  PS+
Sbjct: 503 PVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,157
Number of Sequences: 429
Number of extensions: 1728
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)