GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000785-TA|BGIBMGA000785-PA|undefined
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    29   0.52 
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   1.2  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   6.4  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 20/81 (24%), Positives = 34/81 (41%)

Query: 33  SARWKIFPSSLRLPKLRIKNSGYHKPRILADKSTSLTVVPQQASIAASTGPSQPTHRASW 92
           SA  K    +L +P    +N+   +P  LA  ++S ++V Q      + G  + T R   
Sbjct: 540 SAFTKAGNEALSVPLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRE 599

Query: 93  SYGTQLHCLITPQQFIAAHDR 113
                +H L+ P      HD+
Sbjct: 600 LTERVMHSLMRPVPLDLPHDQ 620


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 56  HKPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 91
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 40  PSSLRLPKLRIKNSGYHKPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 99
           P    LP   +  +  HK   L+D++ S T     ++   +   +QP+   +WS G ++ 
Sbjct: 136 PGEPPLPNEPVPETNCHKESPLSDETVSETSKNDTSNSPTNENQAQPS--IAWSEGHRIA 193

Query: 100 CLITP-QQFIAAHDRIINAWGHTSP 123
            +  P QQ     D + N     +P
Sbjct: 194 AIWDPSQQAYYFWDTLTNTTSWNNP 218


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 22  TFGPSVYRAISSARWKIFPSSLRLPKLRIKNSGYHKPRILADKSTSLTVVPQQAS--IAA 79
           T G S   AI S  WK    S++    + KN+  + P    + S+SL+ + +Q++   A 
Sbjct: 164 TIGYSNSDAIKSIAWKEKDKSIKTWNYQPKNALMYTPE--TNHSSSLSQIKKQSTEIQAD 221

Query: 80  STGPSQ 85
           +TG SQ
Sbjct: 222 ATGLSQ 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,239
Number of Sequences: 5004
Number of extensions: 27501
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 2,362,478
effective HSP length: 68
effective length of query: 109
effective length of database: 2,022,206
effective search space: 220420454
effective search space used: 220420454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)