GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000785-TA|BGIBMGA000785-PA|undefined
         (177 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040145-1|AAH40145.1|  521|Homo sapiens ELK4, ETS-domain protei...    33   0.41 
M85165-1|AAA03631.1|  431|Homo sapiens SAP-1A protein protein.         32   0.95 
BC024221-1|AAH24221.1|  314|Homo sapiens ATG3 autophagy related ...    32   0.95 
BC002830-1|AAH02830.1|  317|Homo sapiens ATG3 protein protein.         32   0.95 
AF202092-1|AAG35611.1|  314|Homo sapiens PC3-96 protein.               32   0.95 
AB079384-1|BAB90843.1|  314|Homo sapiens Apg3p protein.                32   0.95 

>BC040145-1|AAH40145.1|  521|Homo sapiens ELK4, ETS-domain protein
           (SRF accessory protein 1) protein.
          Length = 521

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 42  SLRLPKLRIKNSGYHKPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCL 101
           S+ L K ++ NS   K     + + +L +     S      PS PT   + ++ +Q   +
Sbjct: 395 SVLLEKDKVNNSSRSKKPKGLELAPTLVITSSDPSPLGILSPSLPTASLTPAFFSQTPII 454

Query: 102 ITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRT--QHPSSVSTHRRF 149
           +TP   +++    I+ W   SP   L    L    T  Q PS +++H  F
Sbjct: 455 LTPSPLLSS----IHFWSTLSPVAPLSPARLQGANTLFQFPSVLNSHGPF 500


>M85165-1|AAA03631.1|  431|Homo sapiens SAP-1A protein protein.
          Length = 431

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 42  SLRLPKLRIKNSGYHKPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCL 101
           S+ L K ++ NS   K       + +L +     S      PS PT   + ++ +Q   +
Sbjct: 305 SVLLEKDKVNNSSRSKKPKGLGLAPTLVITSSDPSPLGILSPSLPTASLTPAFFSQTPII 364

Query: 102 ITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRT--QHPSSVSTHRRF 149
           +TP   +++    I+ W   SP   L    L    T  Q PS +++H  F
Sbjct: 365 LTPSPLLSS----IHFWSTLSPVAPLSPARLQGANTLFQFPSVLNSHGPF 410


>BC024221-1|AAH24221.1|  314|Homo sapiens ATG3 autophagy related 3
           homolog (S. cerevisiae) protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 101 LITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRTQHPS 141
           +ITP++F+AA D ++    H  P WQ  T E L  +   P+
Sbjct: 33  VITPEEFVAAGDHLV----HHCPTWQWATGEELKVKAYLPT 69


>BC002830-1|AAH02830.1|  317|Homo sapiens ATG3 protein protein.
          Length = 317

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 101 LITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRTQHPS 141
           +ITP++F+AA D ++    H  P WQ  T E L  +   P+
Sbjct: 33  VITPEEFVAAGDHLV----HHCPTWQWATGEELKVKAYLPT 69


>AF202092-1|AAG35611.1|  314|Homo sapiens PC3-96 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 101 LITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRTQHPS 141
           +ITP++F+AA D ++    H  P WQ  T E L  +   P+
Sbjct: 33  VITPEEFVAAGDHLV----HHCPTWQWATGEELKVKAYLPT 69


>AB079384-1|BAB90843.1|  314|Homo sapiens Apg3p protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 101 LITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRTQHPS 141
           +ITP++F+AA D ++    H  P WQ  T E L  +   P+
Sbjct: 33  VITPEEFVAAGDHLV----HHCPTWQWATGEELKVKAYLPT 69


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,704,841
Number of Sequences: 224733
Number of extensions: 959657
Number of successful extensions: 1828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 73,234,838
effective HSP length: 85
effective length of query: 92
effective length of database: 54,132,533
effective search space: 4980193036
effective search space used: 4980193036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)