GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000785-TA|BGIBMGA000785-PA|undefined
         (177 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    30   0.81 
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z48582-7|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   1.9  
AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical ...    27   7.5  

>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 96  TQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCTHELLATRTQHPSSVSTHRRFRAALAT 155
           T+  CL +P+    + D ++NA   T P  +  +  LL   + H + ++ H  F + + T
Sbjct: 180 TETTCLRSPRTCHGSRDGLLNARKETLP--ERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237

Query: 156 RTQ 158
           R++
Sbjct: 238 RSE 240


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 72  PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 129
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 72  PQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHTSPAWQLCT 129
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P   L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177


>Z48582-7|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 62  ADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHT 121
           A  STS T   QQ+S   ++ PS  T   S S  T     IT        + I +    T
Sbjct: 331 ASTSTSSTSTTQQSSSTITSSPSSTT--LSTSIPTTTTPEITSTLSSLPDNAICSYLDET 388

Query: 122 SPAWQLCTHELLATRTQHPSSVSTHRRFRAALATRT 157
           + +    T  L +T T+ PS+ +T     +  +T T
Sbjct: 389 TTSTTFTTTMLTSTTTEEPSTSTTTTEVTSTSSTVT 424


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 62  ADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQFIAAHDRIINAWGHT 121
           A  STS T   QQ+S   ++ PS  T   S S  T     IT        + I +    T
Sbjct: 331 ASTSTSSTSTTQQSSSTITSSPSSTT--LSTSIPTTTTPEITSTLSSLPDNAICSYLDET 388

Query: 122 SPAWQLCTHELLATRTQHPSSVSTHRRFRAALATRT 157
           + +    T  L +T T+ PS+ +T     +  +T T
Sbjct: 389 TTSTTFTTTMLTSTTTEEPSTSTTTTEVTSTSSTVT 424


>AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical
          protein F56A11.7 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 67 SLTVVPQQASIAASTGPSQPTHRASWSYGTQLH 99
          +LT V Q   +++  G ++  HR  WS GTQLH
Sbjct: 54 TLTCVLQDLYLSSCHG-NEYGHRDLWSVGTQLH 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,926,174
Number of Sequences: 27539
Number of extensions: 147259
Number of successful extensions: 241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 12,573,161
effective HSP length: 77
effective length of query: 100
effective length of database: 10,452,658
effective search space: 1045265800
effective search space used: 1045265800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)