GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000785-TA|BGIBMGA000785-PA|undefined
         (177 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16670.1 68417.m02518 expressed protein                             29   1.3  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    27   5.4  
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a...    27   7.1  

>At4g16670.1 68417.m02518 expressed protein 
          Length = 429

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 47  KLRIKNSGYHKPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQLHCLITPQQ 106
           ++R++ +  H    +A  +T++  V    +     G    +  AS S     HCL   + 
Sbjct: 155 RVRVEKAHLHSAVSIASLATAIAAVTASGNQDGFAGSKMSSALASASELLASHCLELAEL 214

Query: 107 FIAAHDRIINA 117
             A HDR+++A
Sbjct: 215 AGADHDRVVSA 225


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 58  PRILADKSTSLTVVPQQASIAASTGPS 84
           P  LA   T L VVP++  IA  TGP+
Sbjct: 189 PSTLAPPPTPLPVVPREKPIAKPTGPA 215


>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
            aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
            GI:3172025, GI:3172044; identical to cDNA putative
            aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
          Length = 1337

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 48   LRIKNSGYHKPRILADKSTSLTVVPQQASIAAST 81
            ++I NSG+HK R+L+ K++    +   AS+  +T
Sbjct: 1245 VQILNSGHHKNRVLSSKASGEPPLLVAASVHCAT 1278


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,473
Number of Sequences: 28952
Number of extensions: 140005
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 12,070,560
effective HSP length: 77
effective length of query: 100
effective length of database: 9,841,256
effective search space: 984125600
effective search space used: 984125600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)