GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000784-TA|BGIBMGA000784-PA|undefined
         (194 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z77661-4|CAB01183.1|  264|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 1   MQATQSDLTSVTAAPCSGDVQIIQFPIHLKQPDNVRLRKK 40
           ++ ++  + S TA  CS  V I   P+  + PDNV++ +K
Sbjct: 934 VKTSKDHMDSETAGNCSDSV-INDEPVEAEDPDNVKVERK 972


>Z77661-4|CAB01183.1|  264|Caenorhabditis elegans Hypothetical
           protein F40G12.5 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 162 ACCSTYVQLERLECVAH 178
           AC + Y QLE +EC AH
Sbjct: 110 ACTAPYFQLEEIECNAH 126


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.132    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,058
Number of Sequences: 27539
Number of extensions: 77390
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 12,573,161
effective HSP length: 78
effective length of query: 116
effective length of database: 10,425,119
effective search space: 1209313804
effective search space used: 1209313804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)