Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000783-TA|BGIBMGA000783-PA|IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR013032|EGF-like region,
IPR001881|EGF-like calcium-binding, IPR001774|Delta/Serrate/lag-2
(DSL) protein, IPR006210|EGF, IPR009041|Proteinase inhibitor, PMP and
SGCI, IPR009030|Growth factor, receptor, IPR000742|EGF-like, type 3,
IPR001438|EGF-like, type 2, IPR011651|Notch ligand, N-terminal,
IPR013111|EGF, extracellular, IPR006209|EGF-like, IPR013091|EGF
calcium-binding
         (996 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    35   0.049
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    31   1.0  
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...    29   2.4  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   9.8  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 37/131 (28%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 216 CHPTHGRCDRP-------GDCDCRPGWR-GELCSQCQPYPGCKHGYCNGSSWDCTCDTNW 267
           C  +   CD+P         C     W  G +C        C  G C  +S  C   TN+
Sbjct: 374 CRQSTNPCDKPEFCTGISSKCPVDENWDDGRICQDSLGMGSCASGVCTSASRQCKKLTNF 433

Query: 268 GGILCDQDLNYCGTHEPCQH-GGTCENTAPDQY-FCRCAEG--FSGVDCERVDNPCA--- 320
             + C  D         CQ+  GTC  +A D     RC  G  ++GV C  ++   A   
Sbjct: 434 SSLSCHSD----SCKVSCQNEDGTCFISAKDYIDGTRCRGGLCYNGV-CVPIEGSSASWS 488

Query: 321 PQP---CAHGT 328
            QP   CA GT
Sbjct: 489 KQPSLFCASGT 499


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 23/135 (17%)

Query: 206 NCEKPVCKEGCHPTHGRCDR-----PGDCDC-------RPGWRGEL-CSQ-CQPYPGCKH 251
           +C  P  K  CHPT   C          C C       +P +R  + C + C     CK 
Sbjct: 651 SCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILENQPCYRENVRCGELCNKLLSCKT 710

Query: 252 GYCNGSSW-DCTCDTNWGGILCDQDLNYCG--THEPCQHGGTCEN----TAPDQYFCRCA 304
            +C      D  C+++     C +   YC      PC  G  C+      AP +  C C 
Sbjct: 711 HFCEKLCHPDGECESSCKK-ECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVSCECG 769

Query: 305 EGFSGVDCE-RVDNP 318
                V C+   DNP
Sbjct: 770 RIRKKVTCDASYDNP 784


>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 716 LCPAPPQRAARRCLETVAGLEAEGDDVDVLQNDNHGVYNRPDP 758
           +C +P   A  R     AGLEA  D +D        V NRPDP
Sbjct: 15  ICRSPMAEAVFRNEVEKAGLEARFDTIDSCGTGAWHVGNRPDP 57


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 196 KHCLPGWQGDNCEKPVC-KEGCHPTHGRCDRP 226
           K+CL  W  ++C  P+C KE  H T G    P
Sbjct: 133 KNCLQKWLENHCTCPLCRKEVPHETVGSAHPP 164


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,005,822
Number of Sequences: 5004
Number of extensions: 157928
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 10
length of query: 996
length of database: 2,362,478
effective HSP length: 80
effective length of query: 916
effective length of database: 1,962,158
effective search space: 1797336728
effective search space used: 1797336728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)