Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000783-TA|BGIBMGA000783-PA|IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR013032|EGF-like region,
IPR001881|EGF-like calcium-binding, IPR001774|Delta/Serrate/lag-2
(DSL) protein, IPR006210|EGF, IPR009041|Proteinase inhibitor, PMP and
SGCI, IPR009030|Growth factor, receptor, IPR000742|EGF-like, type 3,
IPR001438|EGF-like, type 2, IPR011651|Notch ligand, N-terminal,
IPR013111|EGF, extracellular, IPR006209|EGF-like, IPR013091|EGF
calcium-binding
         (996 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.57 
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    24   5.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   7.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 192 PDGDKHCLPGWQGDNCEKPVCKE 214
           P G  HC PG+Q D  EK  C E
Sbjct: 243 PSGGCHCKPGYQAD-VEKQECTE 264



 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 5/29 (17%)

Query: 227 GDCDCRPGWRGEL----CSQCQPYPGCKH 251
           G C C+PG++ ++    C++C P    KH
Sbjct: 245 GGCHCKPGYQADVEKQECTEC-PIGKFKH 272


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 914 EEKSNNLQNEENLRRYANPLREERGGTRGEDLPRAHSL 951
           E +  + +NE   R Y    RE     RG    R H +
Sbjct: 292 EREQKSYKNEREYREYRETSRERSRDRRGRGRSREHRI 329


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 249 CKHGYCNGSSWDCTCDTNWGGILCDQDLNYCGTHEPCQHGGTCENTAPDQYFCRCAEGFS 308
           CK+G    S+            LC    NY G    C  G  C   + ++     AE F 
Sbjct: 46  CKYGIAMSSACGIVQCAKGPDELCGGPQNYLGI---CAEGMQC---SCNKCIGCSAEKF- 98

Query: 309 GVDCERVDNPCAP 321
             +C +  NPC P
Sbjct: 99  --ECSKTSNPCLP 109


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 482  RPCTNGGECVDLLNAYRCICPVGFSGTNCEDD---RDHCAGS-PCGNGAACYTAQSDYYC 537
            R  T     V   NA   I PV  +   C+ +   + H   +  C   +  Y  +     
Sbjct: 921  RYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTTIDCSTQSEYYELEVKDQK 980

Query: 538  HCAPGWTGKNCTQRAARDRKTCSVLVEESERCAEGMCA 575
            +  P       TQ +A + K  + +V +S+   + + A
Sbjct: 981  NGKPPSVVSRSTQTSANNDKDTNAVVTQSKEARDNITA 1018


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,898
Number of Sequences: 429
Number of extensions: 11796
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 996
length of database: 140,377
effective HSP length: 64
effective length of query: 932
effective length of database: 112,921
effective search space: 105242372
effective search space used: 105242372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)