Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000782-TA|BGIBMGA000782-PA|undefined
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   2.2  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.2  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   3.8  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      26   5.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   8.7  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   8.7  

>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 143 HRAVIESFSSINHPTFNNALLTESVQVYVSVSNLIANVSV 182
           HRA ++  S+++  T +  +  ESVQ    VS  I NV +
Sbjct: 299 HRASVDILSNLHESTVSPPMADESVQRSSEVSKSIPNVEL 338


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 72  HRLDSIGIITSHTRGYDHIAKGKYSRHVTVGAARSHCIATYSEGHTRHTRSDPLAPCTAL 131
           HR D  G++T     Y+ I +  Y   V  GA  S    +YS G    T S      TAL
Sbjct: 28  HRRDDDGVLTV----YETILETVYVTAVP-GANSSSSYTSYSTGLASVTESSDDGASTAL 82

Query: 132 GDQTFHIVLIRHRAVIESFSSINHP 156
              +   V++   A   S S+ ++P
Sbjct: 83  PTTSTESVVVTTSAPAASSSATSYP 107


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 123 DPLAPCTALGDQTFHIVLIRHRAVIESFSSINHPTFNNALLTESVQVY 170
           DP  PC  +   T  ++     A +  F S+ +PT   ++L   +  Y
Sbjct: 84  DPSMPCNTIRMWTIGLIYSTVGAAVNMFFSLRNPTVTLSVLISELLAY 131


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 87  YDHIAKGKYSRHVTVGAARSHCIATYSEGHTRHTRSDPLAP 127
           Y  +A+ KY  H T+     +    +SE H  H +   L P
Sbjct: 32  YSEVAQ-KYGVHATIDEIEHNTFKDFSEKHKNHGKKSGLNP 71


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 122 SDPLAPCTALGDQTFHIVLIRHRAVIESFSSINHPTFNNALLTESVQVYVSVSNLIANVS 181
           S  L+    L   TF  +     +   S SS +  TF++A  T +   Y+S S+++++ S
Sbjct: 161 SSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSS 220

Query: 182 VRSRAS 187
             S +S
Sbjct: 221 SPSSSS 226


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 51  ISSPSKLIDIICTVLCTLYTVHRLDSIGIITSHTRGY-DHIAK 92
           +  P+  +D++       + V++ D   II SH  G+ DH+ +
Sbjct: 572 LDEPTNHLDVVNVAWLENFLVNQKDVSSIIVSHDSGFLDHVVQ 614


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 134 QTFHIVLIRHRAVIESFSSINHPTFNNALLTESVQVYVSVSNLI 177
           + FH++   ++A   +FS  ++  F +ALL   +Q   S+S++I
Sbjct: 504 EMFHVLKGFYKAA-SAFSKNSYSCFKSALLRRLIQQLPSISSII 546


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,671
Number of Sequences: 5004
Number of extensions: 33805
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 7
length of query: 270
length of database: 2,362,478
effective HSP length: 72
effective length of query: 198
effective length of database: 2,002,190
effective search space: 396433620
effective search space used: 396433620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)