Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000782-TA|BGIBMGA000782-PA|undefined
(270 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11) 31 0.76
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8) 29 3.1
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5) 29 4.0
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 9.3
SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
Length = 540
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 227 VLRATCRRASVRSRCGPVMQTSSDSPRALATQHVTRTTASL 267
V R CRR S+ RC P+ ++S + T+ VT+ T +
Sbjct: 149 VKRGRCRRFSINCRCNPLQINMNNSTVSKLTEPVTQATQEM 189
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 120 TRSDPLAPCTALGDQTFHIVLIRHRAVIESFSSINHPTFNNALLTESVQVYVSVSNLIAN 179
T DPL+P +A T ++V + N+P+ N ALLT +V +V +++A+
Sbjct: 2967 TDGDPLSPNSATASLTINVVDVND----------NYPSCNPALLTPAVPESAAVGSMLAS 3016
Query: 180 VSVRSRAS-LRGQ 191
++ S L GQ
Sbjct: 3017 LNCSDTDSGLNGQ 3029
>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
Length = 410
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 144 RAVIESFSSINHPTFNNALLTESVQVYVSVSNLIAN 179
+AVI+ F+S H T +N + + V+ Y S+S + N
Sbjct: 64 KAVIDWFTSTEHKTASNFICLDIVEFYPSISQELLN 99
>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
Length = 773
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 81 TSHTRGYDHIAKGKYSRHVTVGAARSHCIATYSEGHTRHTRSDPLAPCT 129
T H ++H A G Y G RS C+AT+ E R D L CT
Sbjct: 478 TDHILNFEH-ADGAYLIQYKDGVRRSQCVATHVEA---IPREDVLRVCT 522
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 71 VHRLDSIGIITSHTRGYDHIAKGKYSRHVTVGAARSHCIATYS 113
V+ +DS+ T GY + G+ +R+ TV A+ H + + S
Sbjct: 5140 VYYVDSVACYTCIQTGYRGVRSGRSTRYRTVAASEGHDVPSTS 5182
>SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 78 GIITSHTRGY--DHIAKGKYSRHVTVGAARSHCIATYSEGHTRHTR 121
G +T HTRG + H T G ARS I GH+ +TR
Sbjct: 140 GTVTIHTRGMVRSQYIHAVWHGHSTRGMARSQYIHAVWYGHSTYTR 185
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 80 ITSHTRGYDHIAKGKYSRHVTVGAARSHCIATYSEGHTRHTR 121
IT GY ++ +R +T+ S C++T SE +TR
Sbjct: 765 ITERAPGYGPLSVMPVTRPLTIAIPSSSCLSTVSEAEATNTR 806
>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 77 IGIITSHTRGYDHIAKGKYSRHVTVGAARSHCIATYSEGHTR 118
IG S + HI T+G R HC+ T+SE H R
Sbjct: 315 IGRGQSDLKWESHIRNVTAKGFRTLGFLRRHCLDTFSENHKR 356
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 140 LIRHRAVIESFSSINH-PTFNNALLTESVQVYVSVSNLIANVSVRSRASLRGQDERTWHW 198
L+ ++E+F + N++ + +++ S IA++ +SRA + +ERT+H
Sbjct: 274 LLAANPILEAFGNAKTIKNDNSSRFGKFIRINFDASGFIADLLEKSRAIRQNSNERTFHI 333
Query: 199 SLHRLAAL 206
+A L
Sbjct: 334 FYQMMAGL 341
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 116 HTRHTRSDPLAPCTALGDQTFHIVLIRHRAVIESFSSINHPTFNNALLTESVQVYVSVSN 175
H TR+ +P AL +Q F + S++HP + LLT VQ+ S
Sbjct: 147 HQHRTRTIYTSPIKALSNQKFRD--------FKKTLSVDHPGLDIGLLTGDVQIKPEASC 198
Query: 176 LIANVSVRSRAS 187
LI + AS
Sbjct: 199 LIMTTEILRNAS 210
>SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 63 TVLCTLYTVHRLDSIGIITSHTRGYDHIAKGKYSRHVTV-----GAARSHCIATYSE--- 114
TV Y R G +T HTRG + + +Y+R+ TV G RS I Y
Sbjct: 524 TVHAVWYGHSRYTRYGTVTVHTRG---MVRSQYTRYDTVTVHTRGMVRSQYIHEYIHAVW 580
Query: 115 -GHTRHTR 121
GH+ +TR
Sbjct: 581 YGHSTYTR 588
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,957,440
Number of Sequences: 59808
Number of extensions: 272418
Number of successful extensions: 567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 16
length of query: 270
length of database: 16,821,457
effective HSP length: 81
effective length of query: 189
effective length of database: 11,977,009
effective search space: 2263654701
effective search space used: 2263654701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -