Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000782-TA|BGIBMGA000782-PA|undefined
         (270 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami...    30   1.9  
At2g28700.1 68415.m03488 MADS-box protein-related contains INTER...    28   5.8  

>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 632

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 133 DQTFHIVL-IRHRAVIESFSSINHPTFNNALLTESVQVYVSVSN 175
           D+T H++  + +  V+E F++I  P   + L+ ESV    SVSN
Sbjct: 53  DETAHVIEELENENVVEDFANITSPAGKSFLMGESVGSTHSVSN 96


>At2g28700.1 68415.m03488 MADS-box protein-related contains
           INTERPRO: IPR002100 MADS-box domain
          Length = 329

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 149 SFSSINHPTFNNALLTESVQVYVSVSNLIANVSVRSRASLRGQD 192
           S S +N P FN+  LT  +Q+ VS ++ + N    +     GQD
Sbjct: 201 SSSFLNSPLFNSPQLTNELQLIVSQNHRLENSLASNLFFSEGQD 244


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,233,171
Number of Sequences: 28952
Number of extensions: 171468
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 12,070,560
effective HSP length: 80
effective length of query: 190
effective length of database: 9,754,400
effective search space: 1853336000
effective search space used: 1853336000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)