Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000781-TA|BGIBMGA000781-PA|undefined
         (152 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containi...    32   0.19 
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   1.8  
At5g50320.1 68418.m06232 radical SAM domain-containing protein /...    26   9.6  
At5g16280.1 68418.m01901 expressed protein                             26   9.6  
At5g15820.1 68418.m01851 zinc finger (C3HC4-type RING finger) fa...    26   9.6  
At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to...    26   9.6  

>At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 786

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 35  RVDYKLYKVRRAAYADTATEHWFQAFQGYAPMFYDI-AIQLFCSAI-DCGKNPSQVKLLQ 92
           ++D  + +  + A  D  T  W     G+    YD+ A+ +F   + D   +P +  L  
Sbjct: 227 QMDLAMAQFEQMAERDIVT--WNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLAS 284

Query: 93  KKTISSNLHKTCIQNEVHVQAVT 115
             +  +NL K CI  ++H   VT
Sbjct: 285 VLSACANLEKLCIGKQIHSHIVT 307


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 56  WFQAFQGYAPMFYDI-AIQLFCSAIDCGKNPSQVKLLQKKTISSNLHK-TCIQNEVHVQA 113
           W     G A    ++ A+ LF   + CG  P Q  +      +S+L +   +  +VHV A
Sbjct: 384 WNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHA 443

Query: 114 VTLFEWIXXXXXXXXXXXXRSRGRC 138
           + +   +             SR RC
Sbjct: 444 IKINN-VSDSFVSTALIDAYSRNRC 467


>At5g50320.1 68418.m06232 radical SAM domain-containing protein /
           GCN5-related N-acetyltransferase (GNAT) family protein
           contains Pfam profiles PF00583: acetyltransferase, GNAT
           family, PF04055: Radical SAM superfamily
          Length = 565

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 51  TATEHWFQAFQGYAPMFYDIAIQLFCSAIDCGKNPSQVKLLQKKTISSNLH 101
           TA E W + F  Y     DI + L      CGKN +  +L+ K ++   LH
Sbjct: 446 TANEGW-ETFLSYEDTRQDILVGLL-RLRKCGKNVTCPELMGKCSVVRELH 494


>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 39  KLYKVRRAAYADTATEH-----WFQAFQGYAPM-FYDIAIQLFCSAIDCGKNPSQVKLLQ 92
           + YK   + Y  T   H     +F   Q YA +  +D+A++     +DCG      + + 
Sbjct: 485 RTYKSAISVYKSTTWSHIKDHLYFHIGQWYAIVGMHDVAVRNMLKVLDCGYQSKATQEIF 544

Query: 93  KKTISSNLHKTCIQNEV 109
            +     + KT +++EV
Sbjct: 545 LRDFFDIVKKTGMKHEV 561


>At5g15820.1 68418.m01851 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 348

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 46  AAYADTATEHWFQAFQGYAPMFYDIAI-QLF 75
           +A  D   E W  +  GYAPM Y+  I Q+F
Sbjct: 224 SAPMDLDVEVWLDSVDGYAPMDYNAIIGQMF 254


>At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 367

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/76 (21%), Positives = 27/76 (35%)

Query: 41  YKVRRAAYADTATEHWFQAFQGYAPMFYDIAIQLFCSAIDCGKNPSQVKLLQKKTISSNL 100
           Y V+     +   E     F      F+   + LF    D G    +  +     + S L
Sbjct: 197 YIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIALVSIVCSGL 256

Query: 101 HKTCIQNEVHVQAVTL 116
             +CI N +H  A+ +
Sbjct: 257 FGSCINNTIHTWALRI 272


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.136    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,125,249
Number of Sequences: 28952
Number of extensions: 101740
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 12,070,560
effective HSP length: 75
effective length of query: 77
effective length of database: 9,899,160
effective search space: 762235320
effective search space used: 762235320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)