GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000781-TA|BGIBMGA000781-PA|undefined
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.7  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    24   8.7  

>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 83  KNPSQVKLLQKKTISSNLHKTCIQ 106
           KN S +K  +KKT+  N H   +Q
Sbjct: 112 KNRSNLKRKRKKTVQHNAHPLWVQ 135


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 89  KLLQKKTISSNLHKTCIQNEVH 110
           +L  KK +  N H+  IQNE H
Sbjct: 325 RLYGKKLLKLNEHEEMIQNETH 346


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.136    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,255
Number of Sequences: 5004
Number of extensions: 20613
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 2
length of query: 152
length of database: 2,362,478
effective HSP length: 67
effective length of query: 85
effective length of database: 2,027,210
effective search space: 172312850
effective search space used: 172312850
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 50 (24.2 bits)