GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000781-TA|BGIBMGA000781-PA|undefined
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    31   0.53 
01_04_0133 + 16477502-16479475                                         30   0.70 
11_04_0093 + 13407686-13409554                                         29   1.6  
03_06_0137 - 31937541-31939892                                         28   3.7  

>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 67   FYDIAIQLFCSAIDCGKNPSQVKLLQKKTISSNLHKT 103
            F+  AI+  C+A D G      K  QKKT  SNL KT
Sbjct: 3832 FFWAAIERICNAADFGSILKSGKKNQKKTALSNLFKT 3868


>01_04_0133 + 16477502-16479475
          Length = 657

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 53  TEHWFQAFQGYAPMFY-DIAIQLFCSAIDCGKNPSQVKLLQKKTISSN 99
           T  W     GY      ++A+Q+FCS +D G  P+++ L    +  +N
Sbjct: 373 TISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVAN 420


>11_04_0093 + 13407686-13409554
          Length = 622

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 56  WFQAFQGYAP-MFYDIAIQLFCSAIDCGKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           W     GY   M  ++A++LF   +  G  P+QV  L      SNL   C   +VH
Sbjct: 293 WTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVH 348


>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 69  DIAIQLFCSAIDCGKNPSQVKLLQKKTISSNLHKTCIQNEVHVQAV 114
           D AI LF S I CG  P+   L    ++ ++L       ++H +A+
Sbjct: 392 DEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 437


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.136    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,618
Number of Sequences: 37544
Number of extensions: 123729
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 4
length of query: 152
length of database: 14,793,348
effective HSP length: 76
effective length of query: 76
effective length of database: 11,940,004
effective search space: 907440304
effective search space used: 907440304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)