GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000781-TA|BGIBMGA000781-PA|undefined
         (152 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37408| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                29   2.2  
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 29   2.2  
SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 29   2.2  
SB_54316| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 29   2.2  
SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                29   2.2  
SB_21937| Best HMM Match : Collagen (HMM E-Value=4.3e-07)              27   6.7  
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_37408| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 323

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 82  GKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           GK  SQ K  Q  T+SSN  + C+Q E+H
Sbjct: 147 GKGQSQSKSSQSSTMSSNEEEMCLQ-EIH 174


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 82  GKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           GK  SQ K  Q  T+SSN  + C+Q E+H
Sbjct: 69  GKGQSQSKSSQSSTMSSNEEEMCLQ-EIH 96


>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 535

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 82  GKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           GK  SQ K  Q  T+SSN  + C+Q E+H
Sbjct: 256 GKGQSQSKSSQSSTMSSNEEEMCLQ-EIH 283


>SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 406

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 82  GKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           GK  SQ K  Q  T+SSN  + C+Q E+H
Sbjct: 158 GKGQSQSKSSQSSTMSSNEEEMCLQ-EIH 185


>SB_54316| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 187

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 82  GKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           GK  SQ K  Q  T+SSN  + C+Q E+H
Sbjct: 147 GKGQSQSKSSQSSTMSSNEEEMCLQ-EIH 174


>SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 320

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 82  GKNPSQVKLLQKKTISSNLHKTCIQNEVH 110
           GK  SQ K  Q  T+SSN  + C+Q E+H
Sbjct: 72  GKGQSQSKSSQSSTMSSNEEEMCLQ-EIH 99


>SB_21937| Best HMM Match : Collagen (HMM E-Value=4.3e-07)
          Length = 232

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 13  CAICTGRLFIFTRSGVRNHIPARVDYKLYKVRRAAYADTATEHWFQAFQGYAPMFYDIAI 72
           C  C  R F FT +GV  H P  +D  LY  + +  A+    H  +  +GY    +   I
Sbjct: 138 CNSCCKRWF-FTFNGVECHGPLPIDGVLYMFKGSG-ANLQELHRVRVIEGYCTNIHKGTI 195

Query: 73  QLFCSAIDC 81
           ++  +  +C
Sbjct: 196 RVGFNVGNC 204


>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/69 (23%), Positives = 27/69 (39%)

Query: 84  NPSQVKLLQKKTISSNLHKTCIQNEVHVQAVTLFEWIXXXXXXXXXXXXRSRGRCSHSDA 143
           NP  + L  K  I   +      ++++ +  T F W             R  GR   SD 
Sbjct: 271 NPPTLILPIKAMIDKGVLDRDYLSKIYPRLKTWFSWFNNTQTGSLPSTYRWHGRDGKSDR 330

Query: 144 TVHPTTVTN 152
            ++P T+T+
Sbjct: 331 ELNPKTLTS 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.136    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,659,219
Number of Sequences: 59808
Number of extensions: 149649
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 8
length of query: 152
length of database: 16,821,457
effective HSP length: 76
effective length of query: 76
effective length of database: 12,276,049
effective search space: 932979724
effective search space used: 932979724
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)