Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000780-TA|BGIBMGA000780-PA|undefined
         (53 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    23   3.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    23   6.4  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 4   RVTGERITRSTTVVTQEGIYMVYGYSADRGL-GGLTSLFQAGVR 46
           RV+ E    + T   +EG  ++   S+D+GL GG+ S     +R
Sbjct: 77  RVSDEVFKEAGTKAPEEGKTLMVACSSDKGLCGGIHSSISRLIR 120


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 5   VTGERITRSTTVVTQEGIYMVYGYSAD 31
           VTG+ I  +  + +Q GIY   G S +
Sbjct: 806 VTGDNIVTAKAIASQCGIYTEDGISME 832


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,772
Number of Sequences: 5004
Number of extensions: 4125
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 53
length of database: 2,362,478
effective HSP length: 34
effective length of query: 19
effective length of database: 2,192,342
effective search space: 41654498
effective search space used: 41654498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)