GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000780-TA|BGIBMGA000780-PA|undefined
         (53 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    19   3.0  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    19   3.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    19   4.0  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    19   4.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   5.3  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    18   6.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    18   6.9  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock
          cognate 70 protein.
          Length = 196

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 19 QEGIYMVYGYSADRGLGG 36
          +EGI+ V   + D  LGG
Sbjct: 41 EEGIFEVKATAGDTHLGG 58


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock
          protein 70 protein.
          Length = 196

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 19 QEGIYMVYGYSADRGLGG 36
          +EGI+ V   + D  LGG
Sbjct: 41 EEGIFEVKATAGDTHLGG 58


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory
          receptor candidate 59 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 4.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 6  TGERITRSTTVVTQEGIYMVYGYSADRGLGGLTSLF 41
          T  RIT+  ++VTQ    +   +SA     G+ ++F
Sbjct: 63 TNLRITQKLSIVTQLADLI---FSASANASGVATVF 95


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory
          receptor candidate 31 protein.
          Length = 250

 Score = 19.0 bits (37), Expect = 4.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 38 TSLFQAGVRTFYK 50
          +S F+A +R FYK
Sbjct: 59 SSSFEADLRQFYK 71


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 6  TGERITRSTTVVTQEG 21
          TGE+  RST+  + EG
Sbjct: 39 TGEKRKRSTSSQSTEG 54


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock
          protein 70 protein.
          Length = 195

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 11 TRSTTVVT-QEGIYMVYGYSADRGLGG 36
          T   +++T   G++ V   S D  LGG
Sbjct: 31 TFDVSILTIDNGVFEVVATSGDTHLGG 57


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 28  YSADRGLGGLTSL 40
           +  D GLGGL ++
Sbjct: 213 FEQDTGLGGLQNI 225


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9743
Number of Sequences: 317
Number of extensions: 220
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 53
length of database: 114,650
effective HSP length: 33
effective length of query: 20
effective length of database: 104,189
effective search space:  2083780
effective search space used:  2083780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)