GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000780-TA|BGIBMGA000780-PA|undefined
         (53 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0161 - 17369081-17369670,17370745-17370760,17370974-173717...    27   1.8  
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192           25   7.5  
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538...    25   9.9  
04_04_0044 - 22333376-22333898,22335509-22336227                       25   9.9  

>06_03_0161 -
           17369081-17369670,17370745-17370760,17370974-17371754,
           17371871-17371972,17372078-17372397
          Length = 602

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 20  EGIYMVYGYSADRGLGGLTSLFQAGVRTFY 49
           EG+Y+++ +  DR L GL    Q+ + T+Y
Sbjct: 157 EGMYLMFAFHGDRTLSGLP--IQSALTTYY 184


>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
          Length = 283

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 27  GYSADRGLGGLTSLFQAG 44
           G +A RG GGLT ++Q G
Sbjct: 83  GVAAGRGRGGLTCMWQCG 100


>10_07_0056 +
           12451510-12451554,12453099-12453149,12453754-12453804,
           12453879-12453944,12454011-12454072,12454459-12454537,
           12454618-12454722,12454824-12454934,12455017-12455154,
           12455298-12455399,12455400-12455474,12455574-12455694,
           12455768-12455922,12456004-12456078,12456160-12456363,
           12457105-12457221
          Length = 518

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TGERITRSTTVVTQEGIYMVYGYSADRGLGGLTSLFQAGV--RTFYKAHA 53
           + + I+R+TT++          YS  +G+ GL     AG+  R  Y A+A
Sbjct: 92  SADAISRATTILASIPGRATGAYSHSQGIKGLRDAIAAGIASRDGYPANA 141


>04_04_0044 - 22333376-22333898,22335509-22336227
          Length = 413

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 3   NRVTGERITRSTTVVTQEGIYMVYGYSADRGLGGL 37
           N V  E +  + T+   E + + YG  +D GLG +
Sbjct: 316 NVVNDEALAIANTMPVLEHLELAYGLFSDTGLGAI 350


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,916
Number of Sequences: 37544
Number of extensions: 29408
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 4
length of query: 53
length of database: 14,793,348
effective HSP length: 34
effective length of query: 19
effective length of database: 13,516,852
effective search space: 256820188
effective search space used: 256820188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)