Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000779-TA|BGIBMGA000779-PA|IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding, IPR000719|Protein kinase,
IPR000961|Protein kinase, C-terminal, IPR011009|Protein kinase-like,
IPR008271|Serine/threonine protein kinase, active site,
IPR002290|Serine/threonine protein kinase
         (660 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    54   3e-09
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   2.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   5.1  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   6.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   6.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   8.8  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 54.0 bits (124), Expect = 3e-09
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 413 AAEVTLALEFLHEHGVIYRDLKLDNILLDSEGHCKLADFGMCKEGIIDGVTTTTFCG--T 470
           A +V L +E L +  V++RDL   N+L+      K++DFG+ ++   D V      G   
Sbjct: 598 ARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVYCKNGGGKLP 657

Query: 471 PDYIAPEILQEQEYGCSVDWWALGVLLYEMLA-GQPPFEADNEDDLFESILHDDVL-YPV 528
             ++A E L  Q Y    D W+ GVLL+E++  G  P+   +  +L + +   + L  P 
Sbjct: 658 VRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDFLKSGNRLARPA 717

Query: 529 WLSRDAVSILKGFMTKAPSRR 549
             S D  +++     + P  R
Sbjct: 718 NCSPDLYAVMLNCWKECPKNR 738


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 216 KAMAALLNEMGISPDKNPRPKTFKVTSSPQL 246
           K + AL+  +GI P KN  P  F+V  +P+L
Sbjct: 65  KPIYALMRIVGIFPIKNTEPGMFRV--APEL 93


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 11/37 (29%), Positives = 12/37 (32%)

Query: 175 CDHCGSLLYGLIKQGLQCEACSMNVHKRCQKNVANNC 211
           C  CG    G     L CE C     +   KN    C
Sbjct: 188 CLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQC 224


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 213 TNTKAMAALLNEMGISPDKNPRPKTFKVTSSPQLP 247
           T+T     L  +    P   P  K   VT  PQ P
Sbjct: 165 TSTTTRTTLTTKFTTKPSTKPTNKPVVVTKPPQAP 199


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 228 SPDKNPRPKTFKVTSSPQLPSPPTH 252
           SP    RPK+  ++  P + +PP H
Sbjct: 266 SPYPMQRPKSASLSPPPHVYNPPDH 290


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 528 VWLSRDAVSILKGF 541
           VW S++ +S L+GF
Sbjct: 293 VWTSKEKISFLRGF 306


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.139    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,857
Number of Sequences: 317
Number of extensions: 6021
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 660
length of database: 114,650
effective HSP length: 61
effective length of query: 599
effective length of database: 95,313
effective search space: 57092487
effective search space used: 57092487
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)