Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000775-TA|BGIBMGA000775-PA|IPR002018|Carboxylesterase,
type B
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76920.1 68414.m08954 F-box family protein (FBX3) contains si...    32   0.87 
At1g10810.1 68414.m01241 aldo/keto reductase family protein cont...    30   3.5  
At5g03110.1 68418.m00259 expressed protein various predicted pro...    30   4.7  
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera...    29   6.2  

>At1g76920.1 68414.m08954 F-box family protein (FBX3) contains
           similarity to stamina pistilloidia GI:4101570, the pea
           ortholog of Fim and UFO from [Pisum sativum]
          Length = 374

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 241 LNCTDPDEIHKTLTELPLEDIMRANDVVQY 270
           +NC  PD +H+  + LP+ DIM    V ++
Sbjct: 6   VNCLPPDSLHQIFSSLPIRDIMICRSVCKF 35


>At1g10810.1 68414.m01241 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 344

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 221 YTASPIYAKMIAEMFLQELGLNCTDPDEIHKTLTELPLE 259
           Y   P Y +   E  L+ LG++C D    H+  T +P+E
Sbjct: 101 YRGDPAYVRAACEASLRRLGVSCIDLYYQHRIDTTVPIE 139


>At5g03110.1 68418.m00259 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 283

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 315 NRDEGEFAKWIIMILDVVNRYKSNPAIILGLRLAYALPSEE 355
           +RDE EF K   +   V+ R KS PA I G ++   LP EE
Sbjct: 242 DRDEEEFTKLRFVRQPVLTRSKSEPARI-GEKMMVLLPDEE 281


>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP-glucose:salicylic acid
           glucosyltransferase [Nicotiana tabacum] GI:7385017;
           contains Pfam profiles PF00201: UDP-glucoronosyl and
           UDP-glucosyl transferase, PF01535: PPR repeat
          Length = 1184

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 250 HKTLTELPLEDIMRANDVVQYKTGPTSFAPVVEIEDHEYTRIIDDDPIALIAQGRAKDIP 309
           H TL   P   I+ AND+  +    +S+  ++     + + I   D +         DI 
Sbjct: 157 HSTLASFPSLPILNANDLPSFLCESSSYPYILRTVIDQLSNI---DRV---------DIV 204

Query: 310 LLMGFNRDEGEFAKWIIMILDVVNRYKSNPAIILGLRLA 348
           L   F++ E +  KWI  +  V+N   + P++ L  RLA
Sbjct: 205 LCNTFDKLEEKLLKWIKSVWPVLNIGPTVPSMYLDKRLA 243


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,790,413
Number of Sequences: 28952
Number of extensions: 599256
Number of successful extensions: 1070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 4
length of query: 560
length of database: 12,070,560
effective HSP length: 85
effective length of query: 475
effective length of database: 9,609,640
effective search space: 4564579000
effective search space used: 4564579000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)