GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000775-TA|BGIBMGA000775-PA|IPR002018|Carboxylesterase,
type B
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    42   2e-04
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    32   0.24 
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    28   3.0  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   6.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   9.1  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    27   9.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   9.1  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 56  KYYSFQGIPYAKPPVGSKRFAELEPIESWSDPFYAYEE-GPACPSRDLVYGSITVKPKGM 114
           K + F GI YAKPPVG  R+     +E   D    Y +    CP          V+    
Sbjct: 17  KCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDF 76

Query: 115 --SEDCIYVNVFVPATAXXXXXXXXXXXXPILVNIHGGTFNTGS 156
              EDC+++N++VPA              P+L  IHGG    G+
Sbjct: 77  KYDEDCLFLNIWVPA------GEKPAEGWPVLYFIHGGWLQVGN 114


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 225 PIYAKMIAEMFLQELGLNCTDPDEIHKTLTELPLEDIMRA 264
           P Y +   ++ L+ LG++C D   +H+   E P+E IM A
Sbjct: 101 PDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIEKIMGA 140


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 320 EFAKWIIMILDVVNRYKSNPAIILGLRLAYALPSEEAFA 358
           E A+W+ M ++ ++ YK++P+ +  +  A  L + + FA
Sbjct: 462 ESAEWLGMAIEKISTYKASPSTLSSILEAACLNNNDKFA 500


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 146 NIHGGTFNTGSGNRDLHGPELLMVKNV-IVINF---NFRLAVFGYLSLASGKIPGNNSLR 201
           N+ GG +  G+ +      +L   +++ + I+F   N     F +  +AS       +  
Sbjct: 423 NLRGGAYGNGNNSESSDNAQLKKEEHLNLAIHFHLLNDHDKCFWHTGMASSYEDYTATFI 482

Query: 202 DMVTLLQGIIMSGSAMANFY----TASPIYAKMIAEMFLQELGLNCTDPDEIHKTLTELP 257
             + L  G+  S     +F     TA+ +  K++  +   +LGLN T P+E  K  TE  
Sbjct: 483 YGLYLRHGLACSPKTHVSFLFLLKTATQLLNKLVECLHSSDLGLNDTTPNE--KLSTEYN 540

Query: 258 LEDIMRANDVVQYKTG 273
            + ++ A  ++ Y+ G
Sbjct: 541 QQRLLLA--LILYELG 554


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 24/152 (15%)

Query: 158  NRDLHGPELLMVKNVIVINFNFRLAVFGYLSLASGKIPGNNSLRDMVTLLQGIIMSGSAM 217
            N  LH P L  +K+ I     F +   GY+ ++  K   N +L  +V   +G+  +   +
Sbjct: 930  NSSLHFPGL-SIKDTI----EFVVKSLGYVEISQLK---NLTLSLVVNAEEGVFSTLITV 981

Query: 218  ANFYTASPIYAKMIAEMFLQELG-LNCTDPDEIHKTLTELPLEDIMRA----------ND 266
             N        A    E+ ++ L  L  T+ +EI      LP+ED  ++          N 
Sbjct: 982  DNLDAQVQSCADS-TELLIKVLSDLGSTEDEEISDCYLALPIEDYAKSLTEVDYNFFENR 1040

Query: 267  VVQYKTGPTSFAPVVEIEDHEYT----RIIDD 294
             + YK+ PT  + V+   D++ +    +I+DD
Sbjct: 1041 GIDYKSNPTEQSTVLVSSDNDISSQEIKIVDD 1072


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 421 RANWLSYKGTAHVEDLTYVFRTTTFLRDHVSIPPQTRDDHMRDWMSTLFSNYVKCKSV 478
           R + L+Y   A  E+ +Y+FRT   L +  S     R D +    S LFSN  + +S+
Sbjct: 114 RHSHLNYLSEADFENCSYLFRTA--LSELRSEKINMRKDQISSLRSGLFSNQREVESL 169


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 451 SIPPQTRDDHMRDWMSTLFSNYVKCKSVL 479
           S  PQ +D H+RD + T+F+ Y K + VL
Sbjct: 421 SSDPQIKD-HVRDRLRTIFTRYFKGEFVL 448


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,674
Number of Sequences: 5004
Number of extensions: 118578
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 7
length of query: 560
length of database: 2,362,478
effective HSP length: 76
effective length of query: 484
effective length of database: 1,982,174
effective search space: 959372216
effective search space used: 959372216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)