GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000775-TA|BGIBMGA000775-PA|IPR002018|Carboxylesterase,
type B
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0240 + 15958110-15958305,15959586-15960763                       39   0.009
02_05_0955 - 33056171-33057256                                         37   0.037
09_04_0239 + 15954995-15956242                                         31   1.8  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           31   2.4  
09_04_0421 + 17417851-17418840                                         30   5.6  
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     29   9.8  

>09_04_0240 + 15958110-15958305,15959586-15960763
          Length = 457

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 80  PIESWSDPFYAYEE--GPACPSRDLVYGSITVKPKGM---SEDCIYVNVFVPATAXXXXX 134
           P ++ SD F A E   G  C +RD       V  K +    E  + V VF+P  A     
Sbjct: 51  PPKAHSDRFGAPERVGGSWCATRDKTRSGNGVATKDVVIDDETGVSVRVFLPVDAAAAAA 110

Query: 135 XXXXXXXPILVNIHGGTFNTGSGN-RDLHG-PELLMVK-NVIVINFNFRLA 182
                  P++V +HGG F TGS + R  H   E L  +   +V++ ++RLA
Sbjct: 111 AAGRRL-PLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRLA 160


>02_05_0955 - 33056171-33057256
          Length = 361

 Score = 37.1 bits (82), Expect = 0.037
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 116 EDCIYVNVFVPATAXXXXXXXXXXXXPILVNIHGGTFNTGSGN-RDLHG-PELLMVK-NV 172
           E  + V VF+P  A            P++V +HGG F TGS + R  H   E L  +   
Sbjct: 65  ETGVSVRVFLPVDAAVAAAAGDGRRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAA 124

Query: 173 IVINFNFRLA 182
           +V++ ++RLA
Sbjct: 125 VVVSVDYRLA 134


>09_04_0239 + 15954995-15956242
          Length = 415

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 88  FYAYEEGPACPSRDLVYGSITVKPKGMSEDC-IYVNVFVPATAXXXXXXXXXXXXPILVN 146
           F  +   PA P      G +T     + ++  + V +F+P  A            P++V 
Sbjct: 41  FVRHATVPASPVERSPSGVVTKDVVAVDDETGVSVRLFLPVDAAAAAVAAGRRL-PLVVY 99

Query: 147 IHGGTFNTGSGNR---DLHGPELLMVKNVIVINFNFRLA 182
           +HGG F +GS +      +   L      +V++ ++RLA
Sbjct: 100 VHGGAFCSGSASAPPFHRYAESLAARAAAVVVSVDYRLA 138


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 328 ILDVVNRYKSNPAIILGLRLAYAL--PSEEAFAKGRFVGKRYFDGEPTLDGLAKSMTDIL 385
           IL+     K+NP+ +L LR    L  P++       FVG+ +   E      A  +T+I+
Sbjct: 301 ILEYWRASKANPSRVLFLRYERLLQDPTDSIRELAEFVGQPFTSSEEE----AGVVTEIV 356

Query: 386 FQYSMIKLAQWRVLLRSAPTYFYLFSYESDFSSVKRANWLSY 427
              SM  L   +     A   F  FS++S F       W S+
Sbjct: 357 ELCSMENLMSQKANKEGAQGVFIKFSHDSYFRKGVAGGWTSH 398


>09_04_0421 + 17417851-17418840
          Length = 329

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 96  ACPSRDLVYGSITVKPKGMSEDCIYVNVFVPATAXXXXXXXXXXXXPILVNIHGGTFNTG 155
           A PS D   G  +     +  D +   +++P+T             P+LV  HGG F  G
Sbjct: 38  APPSTDAATGVSSKDVVVVPGDGVSARIYLPSTPASGYGRRL----PVLVFFHGGGFCLG 93

Query: 156 SG-NRDLHG--PELLMVKNVIVINFNFRLA 182
           S  +   HG    L     VIV++  +RLA
Sbjct: 94  SAFDAATHGHANRLAARAGVIVVSVEYRLA 123


>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 501 KFCFSNPTCTELDDPRWPPTD--MKELMYQVIREPHVYNMSTLSDELMEMVEFVDSVDDQ 558
           K   S  TC+ ++   WPP    + E++ +V+   H  NM+ +S  + E ++ +  +DDQ
Sbjct: 332 KTLISERTCS-IELRPWPPPYFLLNEVIKEVLEICHQVNMNWISSYVWENIQGLLVLDDQ 390

Query: 559 V 559
           V
Sbjct: 391 V 391


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,774
Number of Sequences: 37544
Number of extensions: 721840
Number of successful extensions: 1189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 6
length of query: 560
length of database: 14,793,348
effective HSP length: 86
effective length of query: 474
effective length of database: 11,564,564
effective search space: 5481603336
effective search space used: 5481603336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)