GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000774-TA|BGIBMGA000774-PA|IPR002018|Carboxylesterase,
type B
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    60   8e-10
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    33   0.14 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    31   0.32 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    29   1.7  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   3.0  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    28   4.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   5.3  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    27   7.0  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    27   9.2  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   9.2  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 32/284 (11%)

Query: 41  NKNTKYFSFQGIPYAKPPVGARRFXXXXXXXXXXXXFYAYEEGPA-CPSRDITYGSITVK 99
           N   K   F GI YAKPPVG  R+               Y +    CP          V+
Sbjct: 13  NGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVR 72

Query: 100 RKGMS--ENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLH-GPEL 156
                  E+C++ N++VPA      ++  E    P+L  IHGG  Q G+        P+ 
Sbjct: 73  NPDFKYDEDCLFLNIWVPAG-----EKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQD 125

Query: 157 LMLKD----VIVVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFG 208
           L         I+V+  +RL +FG+L+    L       N G  D    L+W  ++ + FG
Sbjct: 126 LQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFG 185

Query: 209 GDPKRVTILGESAGAASVHLLMLSRA----SKGLFNKAIIMS-GTAI-PNFYSSSPIYAK 262
           G+ + + + G SAG+ S    ++       +  +  +A+++S G ++ P     S I   
Sbjct: 186 GNKENIAVGGISAGSYSALFQLIYETYHPEANQIIKRALLLSNGLSVQPKSVEESQIQFN 245

Query: 263 YISDMFLGELGLNSTELTSDEIHQTLTELPLDDIMRANDVVQYR 306
            ++  F    G+   EL+S E  + L  +P  D+  A++++  R
Sbjct: 246 ELAQKF----GI-PLELSSAEKLEKLRAIPFQDL--ADNILNLR 282


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 183 KIPGNNGLRDMVTLLKWVQRNAKVFGGDPKRVTILGESAGAA 224
           K P ++ +  +   + W+  NA  +  DP+R+  LGE  GA+
Sbjct: 230 KFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGAS 271


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 211 PKRVTILGESAGAASVHLLMLSR--ASKGLFNKAIIMSGTAIPNFYS-SSPIYAKYISDM 267
           P   T+   S GA+++    L+   +S GLF+  +  SG    NF S   P  + +++D 
Sbjct: 439 PNASTLNPSSLGASNLSQPSLANHLSSSGLFDNGLFSSGGLSSNFSSLRRPAPSMHLADS 498

Query: 268 FLGELGLNSTELTSDEIHQTLTELPL 293
                GLN ++  SD      T L L
Sbjct: 499 IRSLRGLNDSKAFSDIRSMPATPLEL 524


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 192 DMVTLLKWVQRNAKVFGGDPKRVTIL-GESAGAASVHLL 229
           D +   KWV  N +  G +PKR   L G SAG   V +L
Sbjct: 143 DAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVL 181


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 363 IYNIVDRYKSNPAVILSPR-LAYELPPQEASAKGIFVGKRYFDGEPTVDGFVKSVTDIYF 421
           I+++V+RY+ +   I + + +  E  P   SA G+F     F  +P V   V++  D   
Sbjct: 214 IHDMVERYQIDGIRIDAVKQMNPEFFPNYTSAAGVFAIGEMFSYDPNVSCSVRNYLDSIT 273

Query: 422 QYPM 425
            YP+
Sbjct: 274 SYPI 277


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 77  FYAYEEGPACPSRDITYGSI---TVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPI 133
           F   E+     ++DI+Y S+   + KR+G+S   I AN   P   + NS  +      PI
Sbjct: 125 FEGEEQSSTGNNQDISYSSVNSLSPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPI 184

Query: 134 LVN 136
           L++
Sbjct: 185 LLS 187


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 173 IFGYLSLASHKIPGNNGLRDMVTLLKWV 200
           I GYLSL+  K  GN+ +     LL WV
Sbjct: 50  ISGYLSLSKSKALGNSSVAGSDILLSWV 77


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/43 (27%), Positives = 26/43 (60%)

Query: 219 ESAGAASVHLLMLSRASKGLFNKAIIMSGTAIPNFYSSSPIYA 261
           E  G   +++  +S   KGL ++++ ++  +I NFY SS +++
Sbjct: 267 EIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFS 309


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 391 ASAKGIFVGKRYFDGEPTVDGFVKSVTDIYFQYPMIKLAQW 431
           A+A G+F  KR+     T+DGF+++  +I   Y   +L +W
Sbjct: 288 AAAAGVFELKRHV--METMDGFMRAGANIVLTYFTPELLEW 326


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 246 SGTAIPNFYSSSPIYAKYISDMFLGELGLNSTELTSD 282
           S   +  +Y     ++ Y   +FL E G N+ E+  D
Sbjct: 232 SSMTVSGYYDRIKEFSNYSIPLFLSEFGCNTVEINDD 268


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,761
Number of Sequences: 5004
Number of extensions: 121612
Number of successful extensions: 279
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 11
length of query: 566
length of database: 2,362,478
effective HSP length: 76
effective length of query: 490
effective length of database: 1,982,174
effective search space: 971265260
effective search space used: 971265260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)