Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000772-TA|BGIBMGA000772-PA|IPR002018|Carboxylesterase,
type B
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containi...    30   4.7  
At5g43990.2 68418.m05382 SET domain-containing protein identical...    29   6.2  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    29   6.2  
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si...    29   8.3  
At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative ...    29   8.3  

>At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 661

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 312 LTTFFPVVETPHPGITTILDEDPNILVQQGRGKDIPLIIGFTNSECHMFQRRFEQIDIVS 371
           L +  P + TP    ++ L+E+P+ LV     +   LI        H     F+++ +  
Sbjct: 20  LCSLTPFIATPRMDFSSFLEENPSDLVYTHNRRIDELIKSGNLLSAH---EAFDEMSVRD 76

Query: 372 KINENPAILVPSNLLYSSTPETIALVSNQISQRYFNGSVDLEGFINMCTDSYY 424
            +  N  +L+  N  Y  +   I L +  +S      +      +++C+D  +
Sbjct: 77  VVTYN--LLISGNSRYGCSLRAIELYAEMVSCGLRESASTFPSVLSVCSDELF 127


>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 294 MPVEKLNEANRILIDQIGLTTFFPVVETPHP---GITTILDEDP-NILVQQGRGKDIPLI 349
           +P+E  ++A  +++ ++   T  P+   P     G +++L+ D  N  V++  G+ +   
Sbjct: 175 VPIENDHDAGELILTKVEPITNMPLSSIPDSVDRGDSSMLEIDKSNGHVEEKAGETVSTA 234

Query: 350 IGFTNSECHMFQRRFEQIDIVSKINENPAILVPSN 384
            G TN        RF    + + I E PA+ + S+
Sbjct: 235 DGTTNDISPTTVARFSDHKLAATIEEPPALELASS 269


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 294 MPVEKLNEANRILIDQIGLTTFFPVVETPHP---GITTILDEDP-NILVQQGRGKDIPLI 349
           +P+E  ++A  +++ ++   T  P+   P     G +++L+ D  N  V++  G+ +   
Sbjct: 152 VPIENDHDAGELILTKVEPITNMPLSSIPDSVDRGDSSMLEIDKSNGHVEEKAGETVSTA 211

Query: 350 IGFTNSECHMFQRRFEQIDIVSKINENPAILVPSN 384
            G TN        RF    + + I E PA+ + S+
Sbjct: 212 DGTTNDISPTTVARFSDHKLAATIEEPPALELASS 246


>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 429

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 275 SILGVNSTNPDEIHEKLVAM--PVEKLNEANRILIDQIGLTTFFPVVETPHP 324
           SI G    +PD I EK+V+M  P  +L ++N  +I     T     +  P+P
Sbjct: 40  SISGTVQLSPDRIAEKVVSMNIPAVRLLDSNPAMIRAFAYTNVSLFLSVPNP 91


>At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative
           similar to ceramide glucosyltransferase (GI:14718995)
           [Gossypium arboreum]; weak similarity to Ceramide
           glucosyltransferase  (Glucosylceramide synthase) (GCS)
           (UDP-glucose:N-acylsphingosine D-glucosyltransferase)
           (GLCT-1) (Swiss-Prot:Q16739) [Homo sapiens]
          Length = 519

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 13/76 (17%)

Query: 276 ILGVNSTNPDEIHEKLVAMPVEKLNEANRILIDQIGLTTFFPVVETPHPG----ITTILD 331
           + G+++T   +IH +L+   VEK+++  + ++       F       HPG    +TT ++
Sbjct: 149 VAGLSTTCSQKIHNQLIG--VEKMHKDTKYVL-------FLDDDVRLHPGTIGALTTEME 199

Query: 332 EDPNILVQQGRGKDIP 347
           ++P I +Q G   D+P
Sbjct: 200 KNPEIFIQTGYPLDLP 215


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,042
Number of Sequences: 28952
Number of extensions: 518671
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 5
length of query: 567
length of database: 12,070,560
effective HSP length: 85
effective length of query: 482
effective length of database: 9,609,640
effective search space: 4631846480
effective search space used: 4631846480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)