Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000771-TA|BGIBMGA000771-PA|undefined
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.7  
SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   6.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.9  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   9.1  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 157  GFYMEIGTAQFGAWAAFATWVGL-AVFSTLKVCRYHQLQNIQVSMYRE 203
            GF++      F         + L A+++ + VCRY Q  ++  S+Y E
Sbjct: 1174 GFHVNNMVIMFSLQLLMLVIINLGAMYTVVPVCRYRQFDSLTASLYPE 1221


>SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 73

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 109 VLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDIDTKDK 152
           +L G+  S A+  T+G+  + D  I R PS    T Q  +TK K
Sbjct: 26  ILIGIAGSTAIF-TMGYKIYSDPEIRRSPSWVAQTQQKEETKVK 68


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 27  VPMSMHQDEFSGNCLLFSKGVWQEDGQLLVSWASRF 62
           VP   H  E    C+ F+  +     ++LV+WAS F
Sbjct: 221 VPSLQHMGELL-QCIAFTGAIGITQPKVLVAWASNF 255


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 198 VSMYRERQRLVNENDSQPSSDGRSTPPQQ 226
           +S Y  R R VNEN+ +P +     PP +
Sbjct: 586 LSDYLSRAREVNENEEEPPAHEFDLPPAE 614


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 22   SLCVIVPMSMHQDEFSGNCLLFSKGVWQEDGQLLV 56
            S+ VI  +S+ ++E+SG   L+ K +W   G+ L+
Sbjct: 3390 SIEVITDLSIERNEWSGFLNLYPKRMWNLVGESLM 3424


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 113 LGVSAALMVTLGFMTWC 129
           +G+ AA+++  G  TWC
Sbjct: 503 IGIGAAILIIAGVETWC 519


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,003,818
Number of Sequences: 5004
Number of extensions: 38475
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 7
length of query: 226
length of database: 2,362,478
effective HSP length: 70
effective length of query: 156
effective length of database: 2,012,198
effective search space: 313902888
effective search space used: 313902888
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)