Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000771-TA|BGIBMGA000771-PA|undefined
         (226 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24158| Best HMM Match : Ycf9 (HMM E-Value=3)                        40   0.002
SB_10279| Best HMM Match : Ycf9 (HMM E-Value=3)                        40   0.002
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)                      28   5.5  
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_24158| Best HMM Match : Ycf9 (HMM E-Value=3)
          Length = 207

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 38  GNCLLFSKGVWQEDGQLLVSWASRFYCNYVILVGILMFLVCCVQIYRLSMLVYKGEDSSF 97
           G+CLLF++    E  ++LV   SR +C+ V+ V +    +  + ++              
Sbjct: 34  GHCLLFAQVF--EVSRVLVG-GSRLWCSLVLFVSVFNLAMSTLLVFEEDQRGLI-RPPRL 89

Query: 98  LSAFLEAVGCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQD-IDTKDKISTV 156
           +S F   +    L    + +A +V+ GF  WC + +    SC    G D    + K S  
Sbjct: 90  VSRFKSCIAFLNLVST-IFSAFLVSFGFWAWCRSYVVN--SCSRTKGMDWYHFRPKYSDC 146

Query: 157 G---FYMEIGTAQFGAWAAFATWVGLAVFSTLKVCRYHQLQNIQVSMYRERQRLVN 209
           G   F+M +            +   L   ST  + +Y Q+   +   YR  +RLVN
Sbjct: 147 GDGYFWMTVMLVHLRLVCLLLS--VLPTDSTKSMAKYRQITAFEDENYRYFRRLVN 200


>SB_10279| Best HMM Match : Ycf9 (HMM E-Value=3)
          Length = 250

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 38  GNCLLFSKGVWQEDGQLLVSWASRFYCNYVILVGILMFLVCCVQIYRLSMLVYKGEDSSF 97
           G+CLLF++    E  ++LV   SR +C+ V+ V +    +  + ++              
Sbjct: 77  GHCLLFAQVF--EVSRVLVG-GSRLWCSLVLFVSVFNLAMSTLLVFEEDQRGLI-RPPRL 132

Query: 98  LSAFLEAVGCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQD-IDTKDKISTV 156
           +S F   +    L    + +A +V+ GF  WC + +    SC    G D    + K S  
Sbjct: 133 VSRFKSCIAFLNLVST-IFSAFLVSFGFWAWCRSYVVN--SCSRTKGMDWYHFRPKYSDC 189

Query: 157 G---FYMEIGTAQFGAWAAFATWVGLAVFSTLKVCRYHQLQNIQVSMYRERQRLVN 209
           G   F+M +            +   L   ST  + +Y Q+   +   YR  +RLVN
Sbjct: 190 GDGYFWMTVMLVHLRLVCLLLS--VLPTDSTKSMAKYRQITAFEDENYRYFRRLVN 243


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 95  SSFLSAFLEAVGCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCE 140
           S+ L A+L A     L GL +SA     +  +T+  N+++R PSC+
Sbjct: 361 STHLPAYLVAAFLKRLSGLALSAPPSCVMLVVTFVANMLKRHPSCQ 406


>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 169 AWAAFATWVGLAVFSTLKVCR---YHQLQNIQVSMY 201
           AW     WV + + STL++     YH LQ+I +  Y
Sbjct: 861 AWIGDGMWVSIRLDSTLRLYNAQTYHHLQDIDIEAY 896


>SB_6636| Best HMM Match : COX7C (HMM E-Value=1.8)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 179 LAVFSTLKVCRYHQLQNIQVSMYR--ERQRLVNENDSQPSSDGRSTPPQ 225
           L  F+ ++VC+  +  N + S YR   RQ L   ++S P+   +   P+
Sbjct: 107 LVPFAAVRVCQSRKRSNYRASKYRGFSRQTLYESSNSFPNGRNKDLRPE 155


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 95  SSFLSAFLEAVGCTVL-CGLGVSAALMVTLGFM 126
           + FLS  ++  GC ++ C +GVS +  VTL ++
Sbjct: 744 TKFLSDAIDGGGCVMVHCNMGVSRSSSVTLAYL 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,676
Number of Sequences: 59808
Number of extensions: 263635
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 6
length of query: 226
length of database: 16,821,457
effective HSP length: 80
effective length of query: 146
effective length of database: 12,036,817
effective search space: 1757375282
effective search space used: 1757375282
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)