Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000771-TA|BGIBMGA000771-PA|undefined
         (226 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.33 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 55  LVSWASRFYCNYVILVGILMFLVCCVQIYRLSM-LVYKGEDSSFLSAFLEAVGCT 108
           +VS +  FY   ++++GI   L C  Q +  S+  V K  D+S   +F+  V  T
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVHAT 248


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 5   NVLLLSQIAGYLMGLILS----LCVIVPMSMHQDEFSGNCLL 42
           N+LL+  IA  L+GLIL     L    P S+    F G  L+
Sbjct: 63  NMLLVFTIAAVLVGLILGFLGRLANPTPQSITLISFPGELLM 104


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 42  LFSKGVWQEDGQLLVSWASRFYCNYVILVGILM-FLVCCVQIYRLSMLV 89
           LF  GV+ +     V  AS    +YV+L GIL+ +LV    + R + +V
Sbjct: 672 LFVCGVFLKHNDTPVVRASGRELSYVLLSGILLCYLVTFALVLRPTDIV 720


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 111 CGLGVSAALMVTLGFMTWCDNIIERF 136
           C L   A + ++L FM W   ++  F
Sbjct: 274 CKLAKVALMTISLWFMAWTPYLVINF 299


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 48  WQEDGQLLVSWASRF 62
           W+ DGQ++V +   F
Sbjct: 252 WRADGQIMVDYEDEF 266


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 111 CGLGVSAALMVTLGFMTWCDNIIERF 136
           C L   A + ++L FM W   ++  F
Sbjct: 24  CKLAKVALMTISLWFMAWTPYLVINF 49


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,271
Number of Sequences: 429
Number of extensions: 2644
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 6
length of query: 226
length of database: 140,377
effective HSP length: 56
effective length of query: 170
effective length of database: 116,353
effective search space: 19780010
effective search space used: 19780010
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)