Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000771-TA|BGIBMGA000771-PA|undefined
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0238 - 27099454-27099651,27100970-27101053 30 1.3
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160... 29 3.1
05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183 29 3.1
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 28 5.4
12_02_0076 + 13284747-13285434,13285507-13285829 28 5.4
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 5.4
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 28 5.4
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 5.4
02_05_1149 + 34471730-34471790,34471975-34472056,34472605-344732... 28 5.4
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 5.4
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 28 5.4
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 28 7.1
02_01_0759 - 5628913-5630870,5631023-5631047 27 9.4
>02_05_0238 - 27099454-27099651,27100970-27101053
Length = 93
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 176 WVGLAVFSTLKVCRYHQLQNIQVSMYRERQRLVN 209
W+GLAV S Y QL N+ Y E L+N
Sbjct: 48 WIGLAVTSAAYFLPYKQLANMSEPEYSENGELIN 81
>08_01_0193 +
1599970-1600503,1601488-1601919,1602010-1602147,
1602532-1602600
Length = 390
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 24 CVIVPMSMHQDEFSGNCLLFSKGVWQEDGQLLVSWASRFYCNYVILVGILMF-LVCCVQI 82
C +V ++ FS +F + W+ L S S Y +IL ++F LVC +Q+
Sbjct: 191 CFVVKVTREMFRFSH---IFQESTWRSCAVLFASIMSWMYLTTIILTSCMLFNLVCNLQV 247
>05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183
Length = 204
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 66 YVILVGILMFLVCCVQIYRLSMLVYKGED-SSFLSAFLEAVGCTVLCGL---GVSAALMV 121
YV+ +G+L F+ +Q+ R + + G+D ++ ++ G V L VSAA+ +
Sbjct: 98 YVVAIGVLAFIYTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVTAYLLMSAVSAAIPI 157
Query: 122 TLGFMTWCDNI 132
T DN+
Sbjct: 158 TNRMREGADNV 168
>12_02_0925 -
24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 353 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 394
>12_02_0076 + 13284747-13285434,13285507-13285829
Length = 336
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDIDTKDKISTVGFYMEI 162
G T++C M + F+ +C+ I+ F DATGQ D + +I
Sbjct: 268 GVTIMCDSWTGPTGMSVINFLIYCNGIM-FFHKSIDATGQSQDANFVLKVTSLMQQI 323
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 330 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 371
>07_03_0014 -
12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 545 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 586
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 474 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 515
>02_05_1149 +
34471730-34471790,34471975-34472056,34472605-34473299,
34473375-34473631,34473726-34474407,34474481-34474684,
34474773-34474903,34475068-34475263,34475347-34475587,
34476067-34476214
Length = 898
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 318 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 359
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 1686 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 1727
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C M + F+ +C+ I+ F DATGQ D
Sbjct: 301 GVTIMCDSWTGPTSMSVINFLIYCNGIM-FFHKSIDATGQSQD 342
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 106 GCTVLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDID 148
G T++C A M + F+ +C+ I+ F + DATG D
Sbjct: 221 GVTLMCDSWTGPAGMAVINFLIYCNGIM-FFHNSVDATGHSQD 262
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 64 CNYVILVGILMFLVCCVQIYRLSMLV 89
CN V LVGIL FLV C +R LV
Sbjct: 426 CNGVTLVGILDFLVNCGPKFRSLSLV 451
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.138 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,495,081
Number of Sequences: 37544
Number of extensions: 244342
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 13
length of query: 226
length of database: 14,793,348
effective HSP length: 80
effective length of query: 146
effective length of database: 11,789,828
effective search space: 1721314888
effective search space used: 1721314888
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -