GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000771-TA|BGIBMGA000771-PA|undefined
         (226 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82078-4|CAB04945.1|  362|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    31   0.89 
U00064-5|AAN84796.1|  237|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U00064-4|AAN84795.1|  232|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    27   8.3  

>Z82078-4|CAB04945.1|  362|Caenorhabditis elegans Hypothetical
           protein W09D6.3 protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 65  NYVILVGILMFLVCCVQIYRLSMLVY-KGEDSSFLSAFLEAVGCTVLCGLGVSAALMVTL 123
           ++  L G+ M +     +YRL +++  K      L   L  +GCT++ G G +  + ++ 
Sbjct: 91  SFCSLFGMSMAIFAIHFVYRLLVMIGPKYLYHYHLQKVLGLIGCTIIVGCGWTVVMHISF 150

Query: 124 GFMTWCDNIIE-RFPSCEDATGQDID 148
           G   + D++I   +    + T  D+D
Sbjct: 151 GPTKYSDSLISLEYLEPRNLTLSDVD 176


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 77  VCCVQIYRLSMLVYKGEDSSFLSAFLEAVGCTVLCGLGVSAALMVTLGFMTWCDNII 133
           + CV +Y +    +K +D+S+  AFL +  CT L           +L  MT C N+I
Sbjct: 133 IWCVVLYEIVACHFKYDDASWSLAFLPSKKCTRLTWYS-DFTFNTSLVVMTLCTNLI 188


>U00064-5|AAN84796.1|  237|Caenorhabditis elegans Hypothetical
           protein ZC155.5b protein.
          Length = 237

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 179 LAVFSTLKVCRYHQLQNIQVSMYRERQRLVNENDSQPSSDG 219
           L +FST   C Y +L N ++ +  E   ++ EN++  +S G
Sbjct: 11  LVIFSTTIKCEYSELMNQKIGVRVEVLNMIYENETTITSTG 51


>U00064-4|AAN84795.1|  232|Caenorhabditis elegans Hypothetical
           protein ZC155.5a protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 179 LAVFSTLKVCRYHQLQNIQVSMYRERQRLVNENDSQPSSDG 219
           L +FST   C Y +L N ++ +  E   ++ EN++  +S G
Sbjct: 11  LVIFSTTIKCEYSELMNQKIGVRVEVLNMIYENETTITSTG 51


>AC006712-4|ABD63214.1|  166|Caenorhabditis elegans Hypothetical
           protein Y119C1B.12 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 26  IVPMSMHQDEFSGNCLLFSKGVWQEDGQLLVSWASRFYCNY-VILVGILMFLVCCV 80
           IV ++M      G   +FS          L+ W S  YC   +I+  IL+ +VCCV
Sbjct: 106 IVRLAMFVAIIIGYVFVFSAYSKNNQCDQLLYWTSFIYCILGLIVFAILLLVVCCV 161


>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
           protein F42E11.1 protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 2   ALTNVLLLSQIAGYLM---GLILSLC--VIVPMSMHQDEFSGNCLLFSKGVWQEDGQLLV 56
           +L+N+   S  A YL+   GL+LS     ++P +    E   N L+  +  WQ       
Sbjct: 28  SLSNLFRHSGCADYLLLLGGLVLSAANGALLPFNSLIFEGITNVLMKGEAQWQNGTFDYD 87

Query: 57  SWAS--RFYCNYVILVGILMF 75
           +++S  + YC    L+G+LMF
Sbjct: 88  TFSSGIQHYCLLYFLLGVLMF 108


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 5   NVLLLSQIAGYLMGLILSLCVIVPMSMHQDEFSGNCLLFSKGVWQEDGQLLVSWASR 61
           ++LL  Q   Y++  ++S+C    +   + E     LL   G +++  Q ++  ASR
Sbjct: 379 DILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASR 435


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,505,067
Number of Sequences: 27539
Number of extensions: 213616
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 7
length of query: 226
length of database: 12,573,161
effective HSP length: 79
effective length of query: 147
effective length of database: 10,397,580
effective search space: 1528444260
effective search space used: 1528444260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)