GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000771-TA|BGIBMGA000771-PA|undefined
         (226 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69910.1 68414.m08045 protein kinase family protein contains ...    29   2.6  
At2g37035.1 68415.m04543 expressed protein                             28   4.5  
At5g48350.1 68418.m05974 hypothetical protein                          27   7.8  

>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/56 (21%), Positives = 31/56 (55%)

Query: 65  NYVILVGILMFLVCCVQIYRLSMLVYKGEDSSFLSAFLEAVGCTVLCGLGVSAALM 120
           N++ ++ ++  L C + ++ +++ +++   +SFLS+  E     +      SAAL+
Sbjct: 253 NHIAVLSLIFALTCLLLVFSVAVAIFRSRRASFLSSINEEDPAALFLRHHRSAALL 308


>At2g37035.1 68415.m04543 expressed protein
          Length = 433

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 97  FLSAFLEAVGCTVLCGLGVSAALMVTLGFMTWCDNIIERFPS 138
           FL +FL A    V+ G     +L++ + F+T  ++++ RFPS
Sbjct: 227 FLVSFLSAAYGWVILGFTTVYSLVLAIMFVTVINDLLGRFPS 268


>At5g48350.1 68418.m05974 hypothetical protein
          Length = 199

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 91  KGEDSSF---LSAFLEAVGCTVLCGLGVSAALM-VTLGFMTWCDNIIERFPSCEDATGQD 146
           +GED +    L  FL     T + G+G++  +M +   F   C N++E  P+  + T   
Sbjct: 83  EGEDDNLPLPLFNFLNLPEFTFV-GIGINKTMMRLESEFGLTCKNVVEIGPATWNLTNMT 141

Query: 147 IDTKDKISTVGFYMEIGTAQFGAWAAF 173
            D K +IS +        A    W  F
Sbjct: 142 TDVKFRISAIVSTERPSNAVLEDWEKF 168


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.138    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,324,677
Number of Sequences: 28952
Number of extensions: 206526
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 3
length of query: 226
length of database: 12,070,560
effective HSP length: 79
effective length of query: 147
effective length of database: 9,783,352
effective search space: 1438152744
effective search space used: 1438152744
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)