Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000770-TA|BGIBMGA000770-PA|IPR002889|Carbohydrate-
binding WSC, IPR003961|Fibronectin, type III, IPR001245|Tyrosine
protein kinase, IPR011009|Protein kinase-like, IPR008957|Fibronectin,
type III-like fold, IPR000719|Protein kinase, IPR000834|Peptidase M14,
carboxypeptidase A, IPR013994|Carbohydrate-binding WSC, subgroup,
IPR002290|Serine/threonine protein kinase
         (728 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...   119   8e-29
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    36   7e-04
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    29   0.15 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   1.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   9.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   9.8  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score =  119 bits (286), Expect = 8e-29
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 11/158 (6%)

Query: 543 ITENKVLQICVQVARGMEYLHTRKIVHKKLCCRNMIISENGTVKIAGFGLSHLRSLHETP 602
           I    +L I  QVA GME+L   ++VH+ L  RN+++ EN TVK++ FGLS  R +++  
Sbjct: 589 IQPKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLS--RDVYQDN 646

Query: 603 DY---------TRWTSHEMLRQTRYNPKADVWSFGVLMWEVLTLGATPYSHSGNKDVGSR 653
            Y          RW + E L   RY   +DVWSFGVL+WE++TLG TPY    + ++   
Sbjct: 647 VYCKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDF 706

Query: 654 ILRGMRPSQPSYVGDELFQVCLQCWQVDPDERPTFSSL 691
           +  G R ++P+    +L+ V L CW+  P  RPTF+ L
Sbjct: 707 LKSGNRLARPANCSPDLYAVMLNCWKECPKNRPTFTEL 744



 Score = 25.4 bits (53), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 479 EKKQMLQELDLLIKTSEHENVISLIGICET 508
           E +Q  QE++++    +H  ++SLIG C T
Sbjct: 493 EIRQFTQEINIMKSVRQHPYIVSLIG-CVT 521


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 36.3 bits (80), Expect = 7e-04
 Identities = 38/185 (20%), Positives = 77/185 (41%), Gaps = 9/185 (4%)

Query: 99   GNNATSVYDTDVVAPGQPSNLVLFNATETTVRLRWSAP-NAYSFITSYVIRAAVIETYSD 157
            G++ TS+       P  P  L + + +  +V+L W AP +  S IT Y+I     +   +
Sbjct: 882  GSDDTSINMIVQEVPEVPYGLKVLDKSGRSVQLSWVAPFDGNSPITRYMIEYKQSKVSWE 941

Query: 158  YNLKPLEWRVSNETLNMELLNLHPGSKYNISVAALN-YDEEGPNITMVTETVIGTPDPSP 216
             N + +   V  +     +  L P + Y+I + A N      P+ T+   T    P   P
Sbjct: 942  GNTERV--LVPGDQTEAGVFTLRPATTYHIRIVAENEIGSSEPSETVTIITAEEVPGGPP 999

Query: 217  PDVEIIQRRGDRMVVH--IPKAKNVNGPVSMYRIVISIELYQQGFIVDTLSNHTYATEQG 274
              + +       +VV+   P  +  NG +  Y +   +    + ++ +T+    +  E+G
Sbjct: 1000 TSIRVETNDQHSLVVYWKPPAREEWNGDILGYYVGYRLANSDKPYLFETVE---FGREEG 1056

Query: 275  LPYYI 279
              +++
Sbjct: 1057 KEHHL 1061


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 498 NVISLIGICETNTTLLVVLEDIKKTLKEML-LLSRQRDIQNNKFCSITENKVLQIC 552
           N+ISL+ +      LL++ + I +   +++ +LS+ + I N K C     K ++ C
Sbjct: 198 NIISLVQLWIFQLYLLILCDQILREFDQIVVILSKVKSILNKKCCEKCGLKKIEFC 253


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 421 GNLKRKLWNIPRNLIE 436
           GN+  +LWN+PR  IE
Sbjct: 151 GNIAMELWNMPRENIE 166


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 299 TYNGFYNAPLPLTNDIDVSLGV 320
           T+N    A  PLT+D D   GV
Sbjct: 185 TFNSLNGAHTPLTDDHDEKYGV 206


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 107 DTDVVAPGQPSNLVLFNATETTVRLRWSAPNAYSFITSY 145
           + DV    +  N+   N  ETT R      +AY+ + +Y
Sbjct: 108 NADVSGQDEEKNIKYRNLLETTTRRLAFVNSAYTLVKAY 146


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,140
Number of Sequences: 317
Number of extensions: 7634
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 728
length of database: 114,650
effective HSP length: 62
effective length of query: 666
effective length of database: 94,996
effective search space: 63267336
effective search space used: 63267336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)