Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000769-TA|BGIBMGA000769-PA|IPR011701|Major facilitator
superfamily MFS_1, IPR007114|Major facilitator superfamily,
IPR005829|Sugar transporter superfamily
         (479 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    29   0.086
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    29   0.086
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   9.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   9.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   9.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 0.086
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 225 VISWEQADPFAALRKVGAERTVLMLCVAVFLSYLPEAGQYSCIFVYLKLVMGFGVVQVAI 284
           V  W++ DP   ++ +   R  L      + +     G+YSC+ V L     F    + I
Sbjct: 189 VFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI 248

Query: 285 FI 286
           +I
Sbjct: 249 YI 250


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 0.086
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 225 VISWEQADPFAALRKVGAERTVLMLCVAVFLSYLPEAGQYSCIFVYLKLVMGFGVVQVAI 284
           V  W++ DP   ++ +   R  L      + +     G+YSC+ V L     F    + I
Sbjct: 189 VFLWKEGDPVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQI 248

Query: 285 FI 286
           +I
Sbjct: 249 YI 250


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 247 LMLCVAVFLSYLPEAGQYSCIFVYLKLVMGFGVVQVAIFIAIVGVLSIGVQVILGFLMKS 306
           LM  + V+  ++PE    SC F YL         ++ IF+A +   S  + +IL     S
Sbjct: 178 LMPVMGVWGRFVPEGFLTSCSFDYLT-----DTNEIRIFVATIFTFSYCIPMILIIYYYS 232

Query: 307 LGAKHTI 313
               H +
Sbjct: 233 QIVSHVV 239


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 375 GVRGLCNGLGPAMFGVIFY 393
           G+ GL  G G ++ G+I Y
Sbjct: 171 GITGLYRGFGVSVQGIIIY 189


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 375 GVRGLCNGLGPAMFGVIFY 393
           G+ GL  G G ++ G+I Y
Sbjct: 171 GITGLYRGFGVSVQGIIIY 189


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 412 ERHALLVPGPPFVLGALLVICALLVTAFL-PEEDSNGR 448
           E H + +    F+L  LLV  A+ V AF+  + D N R
Sbjct: 76  ESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFR 113


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.141    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,725
Number of Sequences: 429
Number of extensions: 4739
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 479
length of database: 140,377
effective HSP length: 60
effective length of query: 419
effective length of database: 114,637
effective search space: 48032903
effective search space used: 48032903
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)