Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000768-TA|BGIBMGA000768-PA|IPR007000|Laminin A
         (978 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    34   0.64 

>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
            273427-274124,274921-274969,276059-276112,276244-276275,
            276319-276484,276563-276628,276717-276812,276868-276957,
            277302-277398,277496-277575,277709-277753,278006-278134,
            278593-278722,278888-279222,279918-280053,280149-280328,
            280422-280679,280752-281137
          Length = 1409

 Score = 33.9 bits (74), Expect = 0.64
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 768  VRPEGQIL--EFVRAMVANRLATDGARWVRLFRDHNSGTYNNQWYVV 812
            +RPEG ++  + V  +V  +  T+G RW     DH SG +N +  +V
Sbjct: 1349 LRPEGTVIFRDTVEVLVKIQSITEGMRWKSQIMDHESGPFNPEKILV 1395


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,831,422
Number of Sequences: 37544
Number of extensions: 1163632
Number of successful extensions: 2314
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 3
length of query: 978
length of database: 14,793,348
effective HSP length: 89
effective length of query: 889
effective length of database: 11,451,932
effective search space: 10180767548
effective search space used: 10180767548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)